Showing posts with label guest post. Show all posts
Showing posts with label guest post. Show all posts

Tuesday, May 26, 2015

Blind trust in unblinded observation in Ecology, Evolution and Behavior (Guest Post by Melissa Kardish)


This is a guest post from Melissa Kardish - a PhD student at UC Davis - writing about a recent paper from work she did at her prior position.  The citation for the paper she is writing about is below:

Kardish MR, Mueller UG, Amador-Vargas S, Dietrich EI, Ma R, Barrett B and Fang C-C (2015) Blind trust in unblinded observation in Ecology, Evolution, and Behavior. Front. Ecol. Evol. 3:51. doi: 10.3389/fevo.2015.00051

Here is her post.


Blind trust in unblinded observation in Ecology, Evolution and Behavior


We recently published our study in Frontiers in Ecology and Evolution where we found that a remarkable number of studies that could be affected by observer bias didn’t indicate whether or not they blinded their research. In fact only 13.3% of studies reported this:



We tried to make this a very transparent study. In addition to journal level data in the main article, we include in our supplemental material a table with the score for every article we read for this study (a summary of these scores per journal can be found in Figure S2 included here). If anything, our results under-represent the amount of studies that could have been scored blind (the real underreporting/underuse of blind observation is probably less than the 13.3% we report). For instance, we did not assess that there was potential for bias in the scoring of microsatellite markers (scored as unlikely to have observer bias). However, we did identify one study which was based on data from microsatellites which did blindly score their markers and report this scoring in their methods (and was therefore scored as “blind” in our study).  We also considered a study blind in its entirety for the purposes of our scoring if only one aspect is reported even if other experiments could also have been influenced by observer bias (Check out our supplemental methods for more ways we conservatively scored in our study).



We recognize that not all EEB studies can be blinded due to a variety of logistical or hypothesis driven reasons; however, we encourage such studies to accurately report this rationale and consider and attempt to minimize observer bias when designing experiments.

Thus far we have had a great response from the surveyed journals. Many of them have notified their editors about the lack of blind observation that we found reported in their journal. One journal has even notified us of plans already in place to address this issue at their next editorial board meeting.

We’re excited to have this work out there and hope this will inspire people to blind their studies and accurately report the science they are doing. We’re also excited to have the study published in an open-access format where we hope the encouragement for blind observation can reach all levels of science. Finally, as reporting of science in our fields improves in the coming years, we hope this study can serve as a template to address other potential concerns in experimental design and reporting.

Monday, June 03, 2013

Guest post from Jake Scott: Building trust: a sine qua non for successful acceptance of preprints in the biological sciences

Today I am happy to have a guest post from my friend and colleague Jake Scott.  The topic of the day is preprints in biology and medicine.



Hi - I'm Jake Scott.  I met Jonathan last year when he and I spoke at TEDMED 2012. Both Jonathan and I have posted recently about the need for, and (slowly) growing movement in the biological sciences to post #preprints of manuscripts in openly accessible fora to circumvent some problems associated with standard academic publishing.  Most worrisome are the issues surrounding #openaccess and the length of time it takes to get information from one's brain to the literature - drastically slowing down the pace of science.

This has worked GREAT in the physics community, where this trend really began quite some time ago when the high energy physicists started the arXiv.  Now, the precedent is set, and no one in physics bats an eye about sticking their paper on the arXiv, and cite other works presented there as standard publications.

The climate in biology, sadly, is much different. Whether this is because of a more competitive climate for funding, or just a field diluted by more talented scientists, I don't know.  But there is a pervasive attitude of fear and mistrust around the idea of preprints.

Before you read on (and become biased by my opinions) take a few second (really, probably 1.5 minutes) and take this quick survey:

Monday, October 03, 2011

Guest post from Katherine Scott of the Journal of Visualized Experiments on #OpenAccess challenges

Today we have another guest post here. This one is from Katherine Scott from JOVE - the Journal of Visualized Experiments. I really like the concept behind JOVE - high quality videos of experimental protocols. Publications in JOVE were initially freely available to all (see my 2008 post about JOVE here). Alas, a few years ago, things changed with the introduction of a subscription model. This saddened many out there, myself included, since JOVE was a wonderful addition to the collection of freely available scientific resources.  I wish they had been able to avoid this, but it seems that they could not.  Katherine Scott from JOVE explains their side of the story below:


Guest post by Katherine Scott "Open Access from the Perspective of an Academic Journal"

Open access from the perspective of an academic journal. I work for the first and only peer-reviewed science video journal indexed in PubMed and MEDLINE, the Journal of Visualized Experiments (JoVE). We started as an open access resource in 2006, but that model wasn’t sustainable for us. The cost of producing high-quality video simply too high.

So how do we remain profitable without losing our open access roots? Balance.

We started offering subscriptions in 2009, but still try to open up access wherever we can. We recently partnered with Health InterNetwork Access to Research Initiative (HINARI), to give free subscriptions to developing countries in South America, Asia and Africa.

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