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Monday, September 01, 2008
Cool Plant Comparative Genomics Resource: Phytozome
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That's a really nice resource! Great interface, too. Looking fwd to reading the paper describing the clustering algorithm. Is it distance-based?
ReplyDeleteA similar tool is OrthologID that uses a character-based phylogenetic framework to establish orthology.
Chiu et al. (2006) OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics 22(6):699-707. [free full text]
dont know any more --- just posted the information about it --- I am not involved in making it
ReplyDeleteWow, clustering of extant genes to get ancient genome data, and all in one site! I'm sure this will be a great resource for my work. I also love the data retrieval service BioMart at Phytozome.
ReplyDelete