Monday, April 03, 2023

Responses to question about functional annotation of metagenomic reads

Posted a question to a few places

Humann suggestion


fraggenescan on the raw reads, then use hmmer w/ pfam-A or kegg hmm.

EggNog Mapper

Metageni/Superfocus Megan + DiamondMetAnnotateReview of relevanceUPROCLooking GlassShortbred

Proteinfer / MGnifyAntiSmash


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