Monday, April 03, 2023

Responses to question about functional annotation of metagenomic reads

Posted a question to a few places

Humann suggestion


fraggenescan on the raw reads, then use hmmer w/ pfam-A or kegg hmm.

EggNog Mapper

Metageni/Superfocus Megan + DiamondMetAnnotateReview of relevanceUPROCLooking GlassShortbred

Proteinfer / MGnifyAntiSmash


No comments:

Post a Comment

Most recent post

My Ode to Yolo Bypass

Gave my 1st ever talk about Yolo Bypass and my 1st ever talk about Nature Photography. Here it is ...