Monday, April 03, 2023

Responses to question about functional annotation of metagenomic reads


Posted a question to a few places


Humann suggestion



 








fraggenescan on the raw reads, then use hmmer w/ pfam-A or kegg hmm.








EggNog Mapper

Metageni/Superfocus Megan + DiamondMetAnnotateReview of relevanceUPROCLooking GlassShortbred





Proteinfer / MGnifyAntiSmash

















MMseq2








No comments:

Post a Comment

Most recent post

Another day to think, to pause, to ponder.

Panorama of Sycamore Park and the memorial to Karim   A bit over 10 years ago I wrote a blog post that I repost all the time. Entitled "...