The article starts of OK - reporting on the new WHO report on antibiotic resistance. But then it gets into the microbiome and what antibiotics supposedly do to it. Some quotes:
"But even more concerning, say experts like Dr. Martin Blaser, director of the human microbiome program at the New York University Langone Medical Center and author of Missing Microbes, is how these antibiotics are affecting the makeup of both good and bad bacteria that live within us – our microbiome. The first big cost of antibiotics is resistance,” he says. “But the other side of the coin is [the fact that] antibiotics are extinguishing our microbiome and changing human development.”Extinguishing our microbiome? Really? The evidence simply does not support such a claim. I personally think antibiotics may be contributing to messing up the microbiome in many people and that this in turn might be contributing to the increase in a variety of human ailments (e.g., I mentioned this issue in my TED talk and many many times here and elsewhere). But "extinguishing"? Not even close. In fact, many of the published sutdies done so far suggest that the human microbiome is pretty resilient in response to antibiotics. Really serious overselling of the impact of antiobitcs by Blaser.
And "changing human development?" Not sure what the evidence for that is either. Most likely this refers to the role the microbiome plays in immune system development but I am not aware of strong evidence that antibiotics lead to changes in human devleopment.
They then quote Blaser again:
If I prescribe a heart medicine for a patient, that heart medicine is going to affect that patient,” says Blaser. “But if I prescribe an antibiotic, that antibiotic will affect the entire community to some degree. And the effect is cumulative.Yes antibiotics can affect more than one person because microbes (and resistance) can spread. But "the effect is cumulative"? I do not think that has been shown.
Finally, Time (well, Alice Park, the author) states (in relation to limiting overuse of antibiotics)
That may also help to protect our microbiomes, which in turn could slow the appearance of chronic diseases such as obesity, cancer and allergies.What? Now antibiotics cause obesity? And allergies? And cancer? Sure - there is good reason to think that antibiotic usage plays a role in obesity and allergies. The evidence is not yet completely overwhelming but it is certainly a reasonable notion. But how did cancer get thrown in here?
I note - as I assume many know - I think the microbiome is critical to many human functions and phenotypes. And screwing with it via excessive use of antibiotics seems like a very very bad idea. The precautionary principle says to me we should avoid any antimicrobials unless absolutely necessary. But do we really need to overstate what we know in order to effect change? Do we need to say things like "antibiotics are extinguishing our microbiome" which is simply untrue? I don't think we do. I think we can be more careful, not mislead people, and still have an impact. And thus, I am giving out today's "Overselling the microbiome" award to Time magazine and Martin Blaser.
UPDATE 5/1 - some links of interest
- Posts tageed "overselling the microbiome"
- Posts tagged "overselling the microbiome award"
- Diabetes & H.pylori - a correlation but no known causation despite authors claims (previous overselling award to Martin Blaser)
- Overselling the microbiome award: Mercola/Perlmutter onfecal transplants for severe neurological dysfunction
- Overselling the microbiome story of the week: aging in fruit flies vs humans
- Winner of the biggest & best overselling of the microbiome -@theallium on Salmonella Diet
- Short post- a bad taste in my mouth for overselling the microbiome
- Lies, damn lies, and press releases - trouble with recent PR about autism and microbiomes
- First multiple "Overselling the microbiome award": the Daily Mail article on Germs
- Diabetes & H.pylori - a correlation but no known causation despite authors claims
- Overselling the microbiome award of the week: Science News on "Bacteria that Trigger Crohn's"
- Overselling the microbiome award: Swiss National Science Foundation on smoking, weight gain and bacteria
- Overselling the microbiome award: VIB press release saying "Intestinal flora determines health of obese people"
- Overselling the microbiome: University Bern press release uses slight of hand to make mouse study seem to be about people
- Award: Ridiculous, absurd, offensive overselling of the microbiome from Chalmers & Gothenburg
- Overselling the microbiome award of the month: Integrative medical group of Irvine
- Overselling the microbiome award: MedicalDaily on Effects of Sugary Drink
- The microbiome in the news: risk of overselling but not always bad coverage
- Dubious Press Release from Cedars-Sinai linking Irritable Bowel Syndrome (IBS) and Bacteria in Gut
- Probiotics are the new viagra & the risks of overselling of probiotics
- Overselling the microbiome award #2: The Marshall Protocol
- Overselling the microbiome award: Stephen Barrie on pre and probiotics at the Huffington Post
- Diversity, stability and resilience of the human gut microbiota
- The human microbiome: ecosystem resilience and health
- Long-term impacts of antibiotic exposure on the human intestinal microbiota
- The application of ecological theory toward an understanding of the human microbiome
- Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
- Gut microbiota disturbance during antibiotic therapy: a multi ...
Ancestral human microbiome
- Insights from Characterizing Extinct Human Gut Microbiomes
- Archeological Fecal Samples Indicate Ancestral Human Gut ...
- Ancient Gut Microbiomes Shed Light on Modern Disease
- What are the consequences of the disappearing human ...
- Reconstructing the ancestral microbiome: the American Gut ...
- Gut microbiome of the Hadza hunter-gatherers : Nature ...
- First Look at the Microbes of Modern Hunter-Gatherers ...
Some papers that offer a more tempered view of the role of the microbiome in causing various disease:
- CE West, MC Jenmalm, SL Prescott. 2014 The gut microbiota and its role in the development of allergic disease: a wider perspective. Clinical & Experimental Allergy, 2014
- Disturbed gut colonisation patterns have been associated with allergic disease, but whether microbial variation is the cause or effect of these diseases is still under investigation. We are far from understanding what constitutes a “healthy gut microbiome” that promotes tolerance. This remains a major limitation and might explain some of the inconsistency in human intervention studies with prebiotics and probiotics. Multidisciplinary integrative approaches with researchers working in networks, using harmonised outcomes and methodologies are needed to advance our understanding in this field.
- The gut microbiota and obesity: from correlation to causality.
- However, the demonstration of causality between constituents of the microbiota and specific diseases remains an important challenge in the field.
- Obesity and the gut microbiome: Striving for causality
- Such data suggest that bona fide associations may exist between microbiota and obesity in humans, although causality remains to be addressed. Whether these associations will hold up to large-scale replication has yet to be determined. This situation is reminiscent of genetic association studies done in the pre-genome-wide association scan era, during which many candidate associations were found using sample sizes which at the time were considered large, but were rather small in retrospect . Very few of these earlier associations have held up to replication in the modern era, where the threshold for association is more stringent and requires sample sizes orders of magnitude larger . It seems reasonable to postulate that causal contributions from the gut microbiome to the development of human obesity have effect sizes on the order of common genetic variations implicated in complex diseases. If this is the case, much larger studies will be necessary before we have clear evidence of association.
- This review considers the nature of the evidence supporting a relationship between the microbiota and the predisposition to disease as associative, correlative, or causal. Altogether, indirect or associative support currently dominates the evidence base, which now suggests that the intestinal microbiome can be linked to a growing number of over 25 diseases or syndromes. While only a handful of cause-and-effect studies have been performed, this form of evidence is increasing.
- Talk by Rob Knight on "From Correlation to Causation in Human Microbiome Studies"
Update 5/4 #2. I would also recommend people check out the Helicobacter foundation web site. which has some useful background information on the organism and the diseases it causes.
Update 5/4 #3. Some recent papers by Martin Blaser worth looking at
- Martin Blaser Google Scholar page
- The microbiome explored: recent insights and future challenges
- Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents
- Antibiotic overuse: stop the killing of beneficial bacteria
UPDATE 5/4/#4. Martin Blaser on Dr. Oz show where Dr. Oz and Blaser both make some statements that are a seriously over the top.
- How Antibiotics Can Make You Gain Weight, Pt 1 - The Dr ...
- How Antibiotics Can Make You Gain Weight, Pt 2 - The Dr ...
Oh - and Barry Marshall - winner of the Nobel Prize for discovering how H. pylori causes ulcers and cancer - chimed in on Twitter:
@phylogenomics @barjammar Jonathon, I never killed anyone by giving them antibiotics but I know of plenty who died when they didn't get 'em.Other Tweets of relevance
— Barry Marshall (@barjammar) May 3, 2014
Fantastic post w/ great notes/links by @phylogenomics: "Overselling the microbiome award" http://t.co/mQbVr59BG0
— Michael Batz (@mbbatz) May 3, 2014
A good reality check on what we know and don't know about the microbiome by @phylogenomics http://t.co/q6UyYqQHjz HT @maggiekb1
— Brooke Borel (@brookeborel) May 3, 2014
Excellent suggestion of @TCNoel to discuss reasons for, against elimination of H. pylori in microbiology course http://t.co/y9P1yXtTDM
— WvSchaik (@WvSchaik) May 1, 2014
Love Blaser's work, but @phylogenetics makes great point about not overselling what we know about the microbiome: http://t.co/5prjfpqVS4
— Robin Friedman (@RCFbio) May 1, 2014
Really good critique of @phylogenomics of Martin Blaser's 'missing microbes' hypothesis: http://t.co/prsH8ZJLjr
— WvSchaik (@WvSchaik) May 1, 2014
UPDATE 5/4 - Caesarian Section Risk notes
A related question I have been thinking about involves Caesarian sections and whether they lead to an increased risk of any ailments that might have a microbial connection (e.g., obesity, allergy, autoimmune diseases). I started digging into the literature on this for my TED talk and then again when I posted something from the Smithsonian Genomics Exhibit that suggested there were no risks associated with C-sections.
Some papers on the topic suggest there may be some risks from C-sections related to these topics but that they are very very small:
- Babies born by caesarean section are more likely to be overweight or obese as adults, according to a new analysis.
- Delivery by caesarean section and risk of obesity in preschool age children: a prospective cohort study
- Caesarean sections and risk of wheezing in childhood and adolescence: data from two birth cohort studies in Brazil
- Infant antibiotic use and wheeze and asthma risk: a systematic review and meta-analysis
- Delivery by Cesarean Section and Early Childhood Respiratory Symptoms and Disorders The Norwegian Mother and Child Cohort Study
- Are Cesarean Sections Contributing to Childhood Obesity?
UPDATE 5/5 Diabetes
Increase in type 1 and type 2 diabetes rates in children reported - is this connected to antibiotic usage or microbiomes?
- Lots of news about new epidemiological studies showing an increase in type 1 and type 2 diabetes in children. See for example
- Diabetes rates skyrocket in kids and teens
- Youth diabetes is on the rise in US, study suggests
- Youth diabetes is on the rise, study suggests
- And in at least a few of these stories, Martin Blaser's book is referenced in relation to whether antibiotic usage may contribute to this. So one might ask - is there evidence for whether antibiotics contribute to type 1 diabetes? I think the results are unclear and ambigious. See some of these papers and stories:
- Antibiotic Use in Childhood Not Linked to Type 1 Diabetes
- Antibiotic Use and Type 1 Diabetes in Childhood
- Respiratory Infections in Early Life and the Development of Islet Autoimmunity in Children at Increased Type 1 Diabetes Risk: Evidence From the BABYDIET Study
- Does the gut microbiota have a role in type 1 diabetes? Early evidence from humans and animal models of the disease
- The changing epidemiology of type 1 diabetes: why is it going through the roof?
- Guts, germs, and meals: the origin of type 1 diabetes