Nice collection in IJSEM worth looking at. The overview is particularly useful
Overview:
- Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea by Jongsik Chun and Fred A. Rainey
Other papers
- Use of gene sequence analyses and genome comparisons for yeast systematics by Cletus P. Kurtzman
- Applications of next-generation sequencing to unravelling the evolutionary history of algae by Kyeong Mi Kim, Jun-Hyung Park, Debashish Bhattacharya, and Hwan Su Yoon
- Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes by Mincheol Kim, Hyun-Seok Oh, Sang-Cheol Park, and Jongsik Chun
- Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age by Jan P. Meier-Kolthoff, Hans-Peter Klenk, and Markus Göker
- Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria by Hafiz Sohail Naushad, Brian Lee, and Radhey S. Gupta
- A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species by Dhamodharan Ramasamy, Ajay Kumar Mishra, Jean-Christophe Lagier, Roshan Padhmanabhan, Morgane Rossi, Erwin Sentausa, Didier Raoult, and Pierre-Edouard Fournier
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