tag:blogger.com,1999:blog-107819442024-03-18T02:47:34.926-07:00 The Tree of LifeBlog of Jonathan A. Eisen, Professor at U.C. Davis. Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.comBlogger2423125tag:blogger.com,1999:blog-10781944.post-36642557124413102522024-01-30T08:35:00.000-08:002024-01-30T08:35:57.350-08:00My Ode to Yolo BypassGave my 1st ever talk about Yolo Bypass and my 1st ever talk about Nature Photography. Here it is ... <div><br /></div><div><br /></div><div>
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This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-62858410281164870452023-12-31T13:42:00.000-08:002023-12-31T13:42:02.371-08:00Four years - 1461 straight days - of iNaturalist observations <p>Well, today is a big day I guess. I just posted an observation to iNaturalist of a hummingbird in my backyard.</p><p><a href="https://www.inaturalist.org/observations/195397005" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1786" data-original-width="1872" height="305" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgN3o9ORWiOwGO8LP-1_WHeNZtIUcE8aNJTl_pVu2bURSHBD_bsNOp02PDbzoN8jq1jUWpJ8Bt-3AilSBWVQof3dzji_t9Pi57TApc-_2LIlx6lo7_WIq4gAodVJo9QHs8gYUBWpNGfN8Tz6ORv1dCU1SBSlcNrfY26JYIwyg3bAaSDAcZKaA/s320/Screenshot%202023-12-31%20at%2012.10.09%20PM.png" width="320" /></a></p><p><a href="https://www.inaturalist.org/observations/195397005">https://www.inaturalist.org/observations/195397005</a></p><p>Not that big a deal unless you are living in some place where it is really cold and you are jealous we have hummingbirds in our yard in Davis, California on December 31.</p><p>But the context here is important.</p><p>This entry completes a somewhat crazy run. I have made iNaturalist observations every day for the last four years. That is, every day for the last 1461 days. </p><p>It all started in January 2020. Before the pandemic reared its ugly head. I decided it might be fun to try and be more regular about iNaturalist postings. I had gotten into posting my observations there during 2018 and 2019 and then I saw on Twitter some people referring to an iNaturalist "Streak Finder" where you could look up how many days in a row someone posted observations. </p><p><br /></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhL0XMIeDD7LFJjATDEYSWI2E4h6BCz16DhlMvP2hGlmy_EG61OESkKgZbTGr_jqtzT3hoOSLXecD0Re6QbVHCv4QF4sj2AiyLlad8OvMc6PNVTgcIUlqCiQdp_joNqllcXF4aXbD2d6fr7NomkirOT5O812LUrQuA_DlTfMrgAM0bQpla-cA/s2512/Screenshot%202023-12-31%20at%2012.45.29%20PM.png" imageanchor="1" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><br /></a></div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhL0XMIeDD7LFJjATDEYSWI2E4h6BCz16DhlMvP2hGlmy_EG61OESkKgZbTGr_jqtzT3hoOSLXecD0Re6QbVHCv4QF4sj2AiyLlad8OvMc6PNVTgcIUlqCiQdp_joNqllcXF4aXbD2d6fr7NomkirOT5O812LUrQuA_DlTfMrgAM0bQpla-cA/s2512/Screenshot%202023-12-31%20at%2012.45.29%20PM.png" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="934" data-original-width="2512" height="119" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhL0XMIeDD7LFJjATDEYSWI2E4h6BCz16DhlMvP2hGlmy_EG61OESkKgZbTGr_jqtzT3hoOSLXecD0Re6QbVHCv4QF4sj2AiyLlad8OvMc6PNVTgcIUlqCiQdp_joNqllcXF4aXbD2d6fr7NomkirOT5O812LUrQuA_DlTfMrgAM0bQpla-cA/s320/Screenshot%202023-12-31%20at%2012.45.29%20PM.png" width="320" /></a><br /><p>And many people were discussing how many they had. And my max # at the time was OK (max of 16) but not particularly high. </p><p><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhDJXLRmNV7j8vVv09W1cLDWP2VQmEYXCDFGVKluGR6n1vflWa45NP8SiwaNR6BYTOntuag9IDhco8q8QYDXK5D2RXoNj29dWFrSJ4hkF69HhulcIkePhMmdrSUapW3AcwX5kCB2ljAQC30plG6uWkD7d6NrL8QQk_of8C2aXoJb7BoGbsumg/s1402/Screenshot%202023-12-31%20at%2012.00.54%20PM.png" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="894" data-original-width="1402" height="204" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhDJXLRmNV7j8vVv09W1cLDWP2VQmEYXCDFGVKluGR6n1vflWa45NP8SiwaNR6BYTOntuag9IDhco8q8QYDXK5D2RXoNj29dWFrSJ4hkF69HhulcIkePhMmdrSUapW3AcwX5kCB2ljAQC30plG6uWkD7d6NrL8QQk_of8C2aXoJb7BoGbsumg/s320/Screenshot%202023-12-31%20at%2012.00.54%20PM.png" width="320" /></a></p><p>And then I kind of forgot about it. But I was inspired by conversations with Laci Gerhart and I decided I would try to do an entry every day for all of 2020.</p><p><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEigqgl2C2XrN0YlHb3c85GHIlSLD6MpItFb-Wfyp26xPepbdf05sZVdF6E2oxUCguN-h8dKry1uVOuCJvg6M1-GdSeKDMlt5BZIAo7cayHSrkElRErIYMw__YF_6JXcPVVJvNXRSj7R_-QpXFvORr7EK9Cgdehxz8BswLUHxwWk7mLwzyYPhw/s1198/Screenshot%202023-12-31%20at%2012.59.30%20PM.png" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="476" data-original-width="1198" height="127" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEigqgl2C2XrN0YlHb3c85GHIlSLD6MpItFb-Wfyp26xPepbdf05sZVdF6E2oxUCguN-h8dKry1uVOuCJvg6M1-GdSeKDMlt5BZIAo7cayHSrkElRErIYMw__YF_6JXcPVVJvNXRSj7R_-QpXFvORr7EK9Cgdehxz8BswLUHxwWk7mLwzyYPhw/s320/Screenshot%202023-12-31%20at%2012.59.30%20PM.png" width="320" /></a></p><p><a href="https://twitter.com/phylogenomics/status/1214614081329487872">https://twitter.com/phylogenomics/status/1214614081329487872</a></p><p>And things of course got complicated quickly. First major complication -- I got called for Jury Duty and was selected as an alternate for a pretty serious case that in the end ended up lasting 3-4 weeks. </p><p>And I was pretty proud when I got through month 1 - January 2020. <a href="https://twitter.com/phylogenomics/status/1223736744295559168"> I posted a thread on Twitter about this.</a></p><div class="separator" style="clear: both; text-align: center;"><br /></div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgLugR3ZcistLs-j0hOIz5ij8Xw2rzNROkZb5HMSFVlTtGG3pgSLjU1WuSWd0NwllfipG6CKi0-JIsL5HmimgFUma05YmZwTwLZ64LZY510jXbQZtk34R1EDdVCGnURgrqM_fxSasIUsuxDgEQeZIgBQv7DL0cBgsctV9kttKFSDUPgf0RzAw/s1660/Screenshot%202023-12-31%20at%201.20.40%20PM.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1660" data-original-width="1234" height="337" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgLugR3ZcistLs-j0hOIz5ij8Xw2rzNROkZb5HMSFVlTtGG3pgSLjU1WuSWd0NwllfipG6CKi0-JIsL5HmimgFUma05YmZwTwLZ64LZY510jXbQZtk34R1EDdVCGnURgrqM_fxSasIUsuxDgEQeZIgBQv7DL0cBgsctV9kttKFSDUPgf0RzAw/w251-h337/Screenshot%202023-12-31%20at%201.20.40%20PM.png" width="251" /></a><div><br /><div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiQlkSWbrTgMI_M_xg8WU9wRL11HGioEif4S7F8G3xL3JUyHvnYgNO62b-D8YYpQlMHxgl6eeUvSkEp_kwfLEXpXD6D-TseAi3HqNS-fi9iddq8_ct91WANFpBEqZyKIZuTnHX4GYhO0YjNCJzww2icYFqqD7_8Nh1ygdJQs3OEqWYlKOkspw/s1496/Screenshot%202023-12-31%20at%201.20.49%20PM.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1496" data-original-width="1234" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiQlkSWbrTgMI_M_xg8WU9wRL11HGioEif4S7F8G3xL3JUyHvnYgNO62b-D8YYpQlMHxgl6eeUvSkEp_kwfLEXpXD6D-TseAi3HqNS-fi9iddq8_ct91WANFpBEqZyKIZuTnHX4GYhO0YjNCJzww2icYFqqD7_8Nh1ygdJQs3OEqWYlKOkspw/s320/Screenshot%202023-12-31%20at%201.20.49%20PM.png" width="264" /></a></div><div><br /></div><div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg1UbH-Q9_whcZXBbu1zpzUZI6lwjvQlIo0dCFicDWbyxBo2iTtsqKKdW3yjV43Jfda07pbTuC5Oh1cr4BA_KPSMa9KGNpKl0K0nCE_y4ETzTcjAWFbhlv0-GBB_QfEndHezsHtGWGhWHnU4pnlsfjhV70DX0lYNHB47vkeXeoQZXL-mW39fg/s1438/Screenshot%202023-12-31%20at%201.20.58%20PM.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1438" data-original-width="1244" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg1UbH-Q9_whcZXBbu1zpzUZI6lwjvQlIo0dCFicDWbyxBo2iTtsqKKdW3yjV43Jfda07pbTuC5Oh1cr4BA_KPSMa9KGNpKl0K0nCE_y4ETzTcjAWFbhlv0-GBB_QfEndHezsHtGWGhWHnU4pnlsfjhV70DX0lYNHB47vkeXeoQZXL-mW39fg/s320/Screenshot%202023-12-31%20at%201.20.58%20PM.png" width="277" /></a></div><div><br /></div><div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgHA9ZSyIxuLfOjRGg7tMyk1sANSNvjIOyLs7cZtTqH-w_TzPdFF0cES0I9J-RSVwzPCWAZ22UdEa9AroBSADoiXG2EwpWOZS7WN-2l1l_qP-3Z9XZNGyAWFXtPFBtG_ckbd5HF_xf9qVt7cwINfvs5ZIgRS40LTZN9nGH56yOuKNs6zAiyZg/s1244/Screenshot%202023-12-31%20at%201.21.17%20PM.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1092" data-original-width="1244" height="241" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgHA9ZSyIxuLfOjRGg7tMyk1sANSNvjIOyLs7cZtTqH-w_TzPdFF0cES0I9J-RSVwzPCWAZ22UdEa9AroBSADoiXG2EwpWOZS7WN-2l1l_qP-3Z9XZNGyAWFXtPFBtG_ckbd5HF_xf9qVt7cwINfvs5ZIgRS40LTZN9nGH56yOuKNs6zAiyZg/w274-h241/Screenshot%202023-12-31%20at%201.21.17%20PM.png" width="274" /></a><br /><div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><p>I also posted this on my blog <a href="https://phylogenomics.blogspot.com/2020/02/a-month-of-dailyinat-observations.html">here</a>.</p><p>One of the reasons I started doing this attempt to post every day was that I was hoping to go on a lot of work trips and to post every day on those trips and this would give me something to do while on the road. </p><p>In February I went to the AAAS Meeting in Seattle and on breaks wandered around and took pics and made lots of postings. Plus I got to hang out with an old friend, Carl Bergstrom, and we wandered around one day looking for birds </p><p><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgMsKypB-P1aX6RCYEKQwtvoJt_VIy2xl5KuEkmJkItTyXekf1jW7D6LM9hvmknTIdi-1yIXQWcpVutFUE2lg1GteQabu89SPGtI5zmjC1-xMQcCtGSsDKgzYgoev66wHJoi4ZYt_6cnA3l8oZYM_MnkGuE4GhctVZ5TcD8VQfq_yjCM6Nhtg/s1218/Screenshot%202023-12-31%20at%201.27.08%20PM.png" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="866" data-original-width="1218" height="228" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgMsKypB-P1aX6RCYEKQwtvoJt_VIy2xl5KuEkmJkItTyXekf1jW7D6LM9hvmknTIdi-1yIXQWcpVutFUE2lg1GteQabu89SPGtI5zmjC1-xMQcCtGSsDKgzYgoev66wHJoi4ZYt_6cnA3l8oZYM_MnkGuE4GhctVZ5TcD8VQfq_yjCM6Nhtg/s320/Screenshot%202023-12-31%20at%201.27.08%20PM.png" width="320" /></a></p>And things seemed good. Except for one thing. While at AAAS, I decided to avoid indoor crowded places because of the growing reports that this new respiratory disease had shown up in the US. And, well, this would be my last trip involving planes until a few weeks ago. So much for my plan to use iNaturalist as a way to help me not sit in hotels / conference centers while on trips. <br /><p>And there were many many struggles in life generally for me and many others as the pandemic spread. But somehow through this I managed to keep making observations. In fact, I would say without a doubt the mission to make observations helps keep me semi sane during some dark times. </p><p>And then I found myself on 12/31/2020. I had done it. One whole year of daily observations.</p><p><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg_hyhvC_NF4tG1aBWOwVQCDredIdm7WzWaBIf-YRMO1b54_VibKBwn-51As9EhfjTvjS4viMfKVEV4BpMyuCNVZ0c9jSyWhyphenhyphenkapzmXObc_SHEYD8EDxfjjntRvPA3I4nGtulGIzqGH7zYMlh8MrGBxrE6Sca3oO2slXQn8_Hq83GF1izQ2Zw/s1870/Screenshot%202023-12-31%20at%201.34.09%20PM.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1870" data-original-width="1054" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg_hyhvC_NF4tG1aBWOwVQCDredIdm7WzWaBIf-YRMO1b54_VibKBwn-51As9EhfjTvjS4viMfKVEV4BpMyuCNVZ0c9jSyWhyphenhyphenkapzmXObc_SHEYD8EDxfjjntRvPA3I4nGtulGIzqGH7zYMlh8MrGBxrE6Sca3oO2slXQn8_Hq83GF1izQ2Zw/s320/Screenshot%202023-12-31%20at%201.34.09%20PM.png" width="180" /></a></p><p><a href="https://twitter.com/phylogenomics/status/1344873226464161792">https://twitter.com/phylogenomics/status/1344873226464161792</a></p><p>And of course lots more happened over the next year. But I made it to 12/31/2021 and had made observations for another whole year.</p><p><br /></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhqn5_erv3vEnXvnKSvGLl8dz9PuSBbJt7CUIHMhDL3ArDQN2Hjs7wElsBmbqa0aNS2-PjH1wzbrY-LG9QgkUOpun5QtsmkZLSkLkU7SCU_cI8cmviKMzbXHNB5x0lckEz3nf_XKlzRC2WJffayOGWPWeq5H_IndgZhe3krVwTfE7gNr4yqLg/s1908/Screenshot%202023-12-31%20at%201.35.23%20PM.png" imageanchor="1" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><br /></a></div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhqn5_erv3vEnXvnKSvGLl8dz9PuSBbJt7CUIHMhDL3ArDQN2Hjs7wElsBmbqa0aNS2-PjH1wzbrY-LG9QgkUOpun5QtsmkZLSkLkU7SCU_cI8cmviKMzbXHNB5x0lckEz3nf_XKlzRC2WJffayOGWPWeq5H_IndgZhe3krVwTfE7gNr4yqLg/s1908/Screenshot%202023-12-31%20at%201.35.23%20PM.png" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1908" data-original-width="904" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhqn5_erv3vEnXvnKSvGLl8dz9PuSBbJt7CUIHMhDL3ArDQN2Hjs7wElsBmbqa0aNS2-PjH1wzbrY-LG9QgkUOpun5QtsmkZLSkLkU7SCU_cI8cmviKMzbXHNB5x0lckEz3nf_XKlzRC2WJffayOGWPWeq5H_IndgZhe3krVwTfE7gNr4yqLg/s320/Screenshot%202023-12-31%20at%201.35.23%20PM.png" width="152" /></a><p>And fast forward to today. I have made it to four years of daily observations. 1461 days. Through health issues. And the ongoing pandemic. And all sorts of complications. One thing that helped me in life was my mission to make some sort of nature observation I could post every day.</p><div>See <a href="https://www.inaturalist.org/observations?d1=2020-01-01&place_id=any&subview=table&user_id=phylogenomics&verifiable=any">https://www.inaturalist.org/observations?d1=2020-01-01&place_id=any&subview=table&user_id=phylogenomics&verifiable=any</a> for the collection of my observations over four years.</div><div><br /></div><div>Some 800+ species. Some 45,000 observations. Mostly birds sure but some other things too.</div><div><br /></div><div>Here are the most reported species during my four years:</div><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjGOq8TcZUU5I4gC3OcKD_mTTgvybBmJtrio9iE-rlrEgYgHLmbac0-zr0Hsd1ss4J5jAui5bP0HHzp_wgKI4Ftd7x1PWrYPPRypJpt1FfCs1MOGPsiRg1AO_X0f1BgiaVzauP-sL9qO8MRHAzkIkm-ixy6OXglxoMM3rt6KLmhFzm4kYtm6g/s2078/Screenshot%202023-12-31%20at%2012.05.46%20PM.png" imageanchor="1" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><br /></a></div><br /><div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjGOq8TcZUU5I4gC3OcKD_mTTgvybBmJtrio9iE-rlrEgYgHLmbac0-zr0Hsd1ss4J5jAui5bP0HHzp_wgKI4Ftd7x1PWrYPPRypJpt1FfCs1MOGPsiRg1AO_X0f1BgiaVzauP-sL9qO8MRHAzkIkm-ixy6OXglxoMM3rt6KLmhFzm4kYtm6g/s2078/Screenshot%202023-12-31%20at%2012.05.46%20PM.png" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="2078" data-original-width="1810" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjGOq8TcZUU5I4gC3OcKD_mTTgvybBmJtrio9iE-rlrEgYgHLmbac0-zr0Hsd1ss4J5jAui5bP0HHzp_wgKI4Ftd7x1PWrYPPRypJpt1FfCs1MOGPsiRg1AO_X0f1BgiaVzauP-sL9qO8MRHAzkIkm-ixy6OXglxoMM3rt6KLmhFzm4kYtm6g/s320/Screenshot%202023-12-31%20at%2012.05.46%20PM.png" width="279" /></a></div><div><br /></div><div><br /></div><div>I am incredibly grateful to all the people who helped identify my postings including those below:</div><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEib6GZI84ULIYc3xywCvSU_tH19X6IJygxf2PVPE3unsJUueBWEjdgnl9g1z7c0EJar-dLc0QPlaYTdY7jirarwbE2qiYT6LZD1KR9xDB3NlML4ZFSEZPY7HWzDB71VaLFUNS7jLBDRqY-fNwmpeos_ZsM1BdCL8EnkZiHOGPOUIkygZzvwMg/s1976/Screenshot%202023-12-31%20at%2012.06.59%20PM.png" imageanchor="1" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><br /></a></div><br /><div><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEib6GZI84ULIYc3xywCvSU_tH19X6IJygxf2PVPE3unsJUueBWEjdgnl9g1z7c0EJar-dLc0QPlaYTdY7jirarwbE2qiYT6LZD1KR9xDB3NlML4ZFSEZPY7HWzDB71VaLFUNS7jLBDRqY-fNwmpeos_ZsM1BdCL8EnkZiHOGPOUIkygZzvwMg/s1976/Screenshot%202023-12-31%20at%2012.06.59%20PM.png" imageanchor="1" style="clear: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><img border="0" data-original-height="1976" data-original-width="1792" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEib6GZI84ULIYc3xywCvSU_tH19X6IJygxf2PVPE3unsJUueBWEjdgnl9g1z7c0EJar-dLc0QPlaYTdY7jirarwbE2qiYT6LZD1KR9xDB3NlML4ZFSEZPY7HWzDB71VaLFUNS7jLBDRqY-fNwmpeos_ZsM1BdCL8EnkZiHOGPOUIkygZzvwMg/s320/Screenshot%202023-12-31%20at%2012.06.59%20PM.png" width="290" /></a></div><div><br /></div><div><br /></div><div>And, well, I also now have a really cool record of nature observations over the last four years. </div><div><br /></div><div>Finally, I am grateful to iNaturalist for the system they have created. And that is why I just made a donation to them and I encourage others to do so too.</div><div><br /></div><div><br /></div><div><br /></div><div><br /></div><div><br /></div><div><br /></div><div><br /></div><div class="separator" style="clear: both; text-align: center;"><br /></div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><br /><div class="separator" style="clear: both; text-align: center;"><br /></div><br /></div></div></div><div class="blogger-post-footer"><br />
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This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-65172726333354463102023-09-28T17:53:00.015-07:002023-10-31T13:14:49.815-07:00Notes on My Meningioma and Gamma Knife Treatment <p>So - on 9/27 I had Gamma Knife treatment at UC Davis for a posterior fossa meningioma that was first found by MRI about 6 years ago. I am going to be collecting my various posts here on the saga. I am also going to post separate posts here about the saga but just wanted to collect some of the other posts for now.</p><div><br /></div>
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<div><b><u><br /></u></b></div><div><b><u><br /></u></b></div><div><b><u>Day 20. October 17.</u></b></div><div><b><u><br /></u></b></div><div>Really brief updates. </div><div><b><u><br /></u></b></div><div>Had some horrible headaches last week but as of a few days ago these have lessened. No significant fatigue or brain fog so that is good.</div><div><br /></div><div>Also - I decided to test my ability to fly on Friday and flew into a concrete pillar at a gas station and smashed my shoulder quite badly. Fortunately it was not broken but it still hurts like hell a few days later and have not slept very well since then. The good news is, this got me to forget about the Gamma Knife treatment ... </div><div><br /></div><div><b><u><br /></u></b></div><div><b><u><br /></u></b></div><div><b><u>Day 13. October 10. </u></b></div><div><br /></div><div>This was definitely a bad day. Went in to work in the AM thinking I might be able to work for their day.</div><div><br /></div><div>First went for a really brief walk at the UC Davis Riparian Preserve. That was nice. </div><div><br /></div>
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<div>Then went to my office in the Genome Center. Saw some colleagues which was nice and chatted for a bit. Then hit by unbearable headache where my head felt like someone took 1000 big rubber bands and wrapped them tightly around my head. </div><div><br /></div><div><br /></div>
<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="268" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid02peaUW4hsGzuLjwCbJSu8eFNSiHSH5RBNugzGzNP26AWtVXgidmBo3CeWw8G9sAGZl&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe></div><div><span style="background-color: #b2b2b2;"><br /></span></div><div> So I went home. Took ibuprofen which did not help. Napped a bit. But nothing helped. Took a bath. Did not help. And that is how the rest of the day went. </div><div><span style="background-color: #b2b2b2;"><br /></span></div><div><span><a name='more'></a></span><span style="background-color: #b2b2b2;"><br /></span>
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<div><b><u>Day 12 - October 9</u></b></div><div><br /></div><div>Not much to report. Felt OK muych of the day but still tired. No bvrain fog really but headaches so ... meh.</div><div><br /></div><div>
<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="683" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid07kY1TLm8XLW7Wxg9ExqSXseDjA7TVF3cY9fBUs8aqxAafLZdvDNqKfU7cutUsp93l&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe><div><br /></div><div><br /></div><div>Day 10 - October 7 - not much to report. Not great but not terrible ...</div><div><br /></div><div><br /></div>
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<div><br /></div><div><br /></div><div><b><u>Day 9 - October 5 </u></b></div><div><br /></div><br />
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<div><br /></div><div><br /></div><div><b><u>Day 8 - October 4</u></b></div><div><br /></div><div><br /></div><br /><b>
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Day 7 - October 3, 2023. </u></b><div><br /></div><div><br />
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Day 6 - October 2, 2023.
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<blockquote class="instagram-media" data-instgrm-captioned="" data-instgrm-permalink="https://www.instagram.com/p/Cx6h-CovYsy/?utm_source=ig_embed&utm_campaign=loading" data-instgrm-version="14" style="background: repeat rgb(255, 255, 255); border-radius: 3px; border: 0px; box-shadow: rgba(0, 0, 0, 0.5) 0px 0px 1px 0px, rgba(0, 0, 0, 0.15) 0px 1px 10px 0px; margin: 1px; max-width: 540px; min-width: 326px; padding: 0px; width: calc(100% - 2px);"><div style="padding: 16px;"> <a href="https://www.instagram.com/p/Cx6h-CovYsy/?utm_source=ig_embed&utm_campaign=loading" style="background: repeat rgb(255, 255, 255); line-height: 0; padding: 0px; text-align: center; text-decoration: none; width: 100%;" target="_blank"> <div style="align-items: center; display: flex; flex-direction: row;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 40px; margin-right: 14px; width: 40px;"></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center;"> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; margin-bottom: 6px; width: 100px;"></div> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; width: 60px;"></div></div></div><div style="padding: 19% 0px;"></div> <div style="display: block; height: 50px; margin: 0px auto 12px; width: 50px;"><svg height="50px" version="1.1" viewbox="0 0 60 60" width="50px" xmlns:xlink="https://www.w3.org/1999/xlink" xmlns="https://www.w3.org/2000/svg"><g fill-rule="evenodd" fill="none" stroke-width="1" stroke="none"><g fill="#000000" transform="translate(-511.000000, -20.000000)"><g><path d="M556.869,30.41 C554.814,30.41 553.148,32.076 553.148,34.131 C553.148,36.186 554.814,37.852 556.869,37.852 C558.924,37.852 560.59,36.186 560.59,34.131 C560.59,32.076 558.924,30.41 556.869,30.41 M541,60.657 C535.114,60.657 530.342,55.887 530.342,50 C530.342,44.114 535.114,39.342 541,39.342 C546.887,39.342 551.658,44.114 551.658,50 C551.658,55.887 546.887,60.657 541,60.657 M541,33.886 C532.1,33.886 524.886,41.1 524.886,50 C524.886,58.899 532.1,66.113 541,66.113 C549.9,66.113 557.115,58.899 557.115,50 C557.115,41.1 549.9,33.886 541,33.886 M565.378,62.101 C565.244,65.022 564.756,66.606 564.346,67.663 C563.803,69.06 563.154,70.057 562.106,71.106 C561.058,72.155 560.06,72.803 558.662,73.347 C557.607,73.757 556.021,74.244 553.102,74.378 C549.944,74.521 548.997,74.552 541,74.552 C533.003,74.552 532.056,74.521 528.898,74.378 C525.979,74.244 524.393,73.757 523.338,73.347 C521.94,72.803 520.942,72.155 519.894,71.106 C518.846,70.057 518.197,69.06 517.654,67.663 C517.244,66.606 516.755,65.022 516.623,62.101 C516.479,58.943 516.448,57.996 516.448,50 C516.448,42.003 516.479,41.056 516.623,37.899 C516.755,34.978 517.244,33.391 517.654,32.338 C518.197,30.938 518.846,29.942 519.894,28.894 C520.942,27.846 521.94,27.196 523.338,26.654 C524.393,26.244 525.979,25.756 528.898,25.623 C532.057,25.479 533.004,25.448 541,25.448 C548.997,25.448 549.943,25.479 553.102,25.623 C556.021,25.756 557.607,26.244 558.662,26.654 C560.06,27.196 561.058,27.846 562.106,28.894 C563.154,29.942 563.803,30.938 564.346,32.338 C564.756,33.391 565.244,34.978 565.378,37.899 C565.522,41.056 565.552,42.003 565.552,50 C565.552,57.996 565.522,58.943 565.378,62.101 M570.82,37.631 C570.674,34.438 570.167,32.258 569.425,30.349 C568.659,28.377 567.633,26.702 565.965,25.035 C564.297,23.368 562.623,22.342 560.652,21.575 C558.743,20.834 556.562,20.326 553.369,20.18 C550.169,20.033 549.148,20 541,20 C532.853,20 531.831,20.033 528.631,20.18 C525.438,20.326 523.257,20.834 521.349,21.575 C519.376,22.342 517.703,23.368 516.035,25.035 C514.368,26.702 513.342,28.377 512.574,30.349 C511.834,32.258 511.326,34.438 511.181,37.631 C511.035,40.831 511,41.851 511,50 C511,58.147 511.035,59.17 511.181,62.369 C511.326,65.562 511.834,67.743 512.574,69.651 C513.342,71.625 514.368,73.296 516.035,74.965 C517.703,76.634 519.376,77.658 521.349,78.425 C523.257,79.167 525.438,79.673 528.631,79.82 C531.831,79.965 532.853,80.001 541,80.001 C549.148,80.001 550.169,79.965 553.369,79.82 C556.562,79.673 558.743,79.167 560.652,78.425 C562.623,77.658 564.297,76.634 565.965,74.965 C567.633,73.296 568.659,71.625 569.425,69.651 C570.167,67.743 570.674,65.562 570.82,62.369 C570.966,59.17 571,58.147 571,50 C571,41.851 570.966,40.831 570.82,37.631"></path></g></g></g></svg></div><div style="padding-top: 8px;"> <div style="color: #3897f0; font-family: Arial, sans-serif; font-size: 14px; font-style: normal; font-weight: 550; line-height: 18px;">View this post on Instagram</div></div><div style="padding: 12.5% 0px;"></div> <div style="align-items: center; display: flex; flex-direction: row; margin-bottom: 14px;"><div> <div style="background-color: #f4f4f4; border-radius: 50%; height: 12.5px; transform: translateX(0px) translateY(7px); width: 12.5px;"></div> <div style="background-color: #f4f4f4; flex-grow: 0; height: 12.5px; margin-left: 2px; margin-right: 14px; transform: rotate(-45deg) translateX(3px) translateY(1px); width: 12.5px;"></div> <div style="background-color: #f4f4f4; border-radius: 50%; height: 12.5px; transform: translateX(9px) translateY(-18px); width: 12.5px;"></div></div><div style="margin-left: 8px;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 20px; width: 20px;"></div> <div style="border-bottom-color: transparent; border-bottom-style: solid; border-bottom-width: 2px; border-bottom: 2px solid transparent; border-left-color: rgb(244, 244, 244); border-left-style: solid; border-left-width: 6px; border-left: 6px solid #f4f4f4; border-top-color: transparent; border-top-style: solid; border-top-width: 2px; border-top: 2px solid transparent; height: 0px; transform: translateX(16px) translateY(-4px) rotate(30deg); width: 0px;"></div></div><div style="margin-left: auto;"> <div style="border-right-color: transparent; border-right-style: solid; border-right-width: 8px; border-right: 8px solid transparent; border-top-color: rgb(244, 244, 244); border-top-style: solid; border-top-width: 8px; border-top: 8px solid #F4F4F4; transform: translateY(16px); width: 0px;"></div> <div style="background-color: #f4f4f4; flex-grow: 0; height: 12px; transform: translateY(-4px); width: 16px;"></div> <div style="border-left-color: transparent; border-left-style: solid; border-left-width: 8px; border-left: 8px solid transparent; border-top-color: rgb(244, 244, 244); border-top-style: solid; border-top-width: 8px; border-top: 8px solid #F4F4F4; height: 0px; transform: translateY(-4px) translateX(8px); width: 0px;"></div></div></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center; margin-bottom: 24px;"> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; margin-bottom: 6px; width: 224px;"></div> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; width: 144px;"></div></div></a><p style="color: #c9c8cd; font-family: Arial, sans-serif; font-size: 14px; line-height: 17px; margin-bottom: 0px; margin-top: 8px; overflow: hidden; padding: 8px 0px 7px; text-align: center; text-overflow: ellipsis; white-space: nowrap;"><a href="https://www.instagram.com/p/Cx6h-CovYsy/?utm_source=ig_embed&utm_campaign=loading" style="color: #c9c8cd; font-family: Arial, sans-serif; font-size: 14px; font-style: normal; font-weight: normal; line-height: 17px; text-decoration: none;" target="_blank">A post shared by Jonathan Eisen (@phylogenomics)</a></p></div></blockquote> <script async="" src="//www.instagram.com/embed.js"></script>
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<blockquote class="instagram-media" data-instgrm-captioned="" data-instgrm-permalink="https://www.instagram.com/reel/Cx4DpxiPJXj/?utm_source=ig_embed&utm_campaign=loading" data-instgrm-version="14" style="background: repeat rgb(255, 255, 255); border-radius: 3px; border: 0px; box-shadow: rgba(0, 0, 0, 0.5) 0px 0px 1px 0px, rgba(0, 0, 0, 0.15) 0px 1px 10px 0px; margin: 1px; max-width: 540px; min-width: 326px; padding: 0px; width: calc(100% - 2px);"><div style="padding: 16px;"> <a href="https://www.instagram.com/reel/Cx4DpxiPJXj/?utm_source=ig_embed&utm_campaign=loading" style="background: repeat rgb(255, 255, 255); line-height: 0; padding: 0px; text-align: center; text-decoration: none; width: 100%;" target="_blank"> <div style="align-items: center; display: flex; flex-direction: row;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 40px; margin-right: 14px; width: 40px;"></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center;"> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; margin-bottom: 6px; width: 100px;"></div> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; width: 60px;"></div></div></div><div style="padding: 19% 0px;"></div> <div style="display: block; height: 50px; margin: 0px auto 12px; width: 50px;"><svg height="50px" version="1.1" viewbox="0 0 60 60" width="50px" xmlns:xlink="https://www.w3.org/1999/xlink" xmlns="https://www.w3.org/2000/svg"><g fill-rule="evenodd" fill="none" stroke-width="1" stroke="none"><g fill="#000000" transform="translate(-511.000000, -20.000000)"><g><path d="M556.869,30.41 C554.814,30.41 553.148,32.076 553.148,34.131 C553.148,36.186 554.814,37.852 556.869,37.852 C558.924,37.852 560.59,36.186 560.59,34.131 C560.59,32.076 558.924,30.41 556.869,30.41 M541,60.657 C535.114,60.657 530.342,55.887 530.342,50 C530.342,44.114 535.114,39.342 541,39.342 C546.887,39.342 551.658,44.114 551.658,50 C551.658,55.887 546.887,60.657 541,60.657 M541,33.886 C532.1,33.886 524.886,41.1 524.886,50 C524.886,58.899 532.1,66.113 541,66.113 C549.9,66.113 557.115,58.899 557.115,50 C557.115,41.1 549.9,33.886 541,33.886 M565.378,62.101 C565.244,65.022 564.756,66.606 564.346,67.663 C563.803,69.06 563.154,70.057 562.106,71.106 C561.058,72.155 560.06,72.803 558.662,73.347 C557.607,73.757 556.021,74.244 553.102,74.378 C549.944,74.521 548.997,74.552 541,74.552 C533.003,74.552 532.056,74.521 528.898,74.378 C525.979,74.244 524.393,73.757 523.338,73.347 C521.94,72.803 520.942,72.155 519.894,71.106 C518.846,70.057 518.197,69.06 517.654,67.663 C517.244,66.606 516.755,65.022 516.623,62.101 C516.479,58.943 516.448,57.996 516.448,50 C516.448,42.003 516.479,41.056 516.623,37.899 C516.755,34.978 517.244,33.391 517.654,32.338 C518.197,30.938 518.846,29.942 519.894,28.894 C520.942,27.846 521.94,27.196 523.338,26.654 C524.393,26.244 525.979,25.756 528.898,25.623 C532.057,25.479 533.004,25.448 541,25.448 C548.997,25.448 549.943,25.479 553.102,25.623 C556.021,25.756 557.607,26.244 558.662,26.654 C560.06,27.196 561.058,27.846 562.106,28.894 C563.154,29.942 563.803,30.938 564.346,32.338 C564.756,33.391 565.244,34.978 565.378,37.899 C565.522,41.056 565.552,42.003 565.552,50 C565.552,57.996 565.522,58.943 565.378,62.101 M570.82,37.631 C570.674,34.438 570.167,32.258 569.425,30.349 C568.659,28.377 567.633,26.702 565.965,25.035 C564.297,23.368 562.623,22.342 560.652,21.575 C558.743,20.834 556.562,20.326 553.369,20.18 C550.169,20.033 549.148,20 541,20 C532.853,20 531.831,20.033 528.631,20.18 C525.438,20.326 523.257,20.834 521.349,21.575 C519.376,22.342 517.703,23.368 516.035,25.035 C514.368,26.702 513.342,28.377 512.574,30.349 C511.834,32.258 511.326,34.438 511.181,37.631 C511.035,40.831 511,41.851 511,50 C511,58.147 511.035,59.17 511.181,62.369 C511.326,65.562 511.834,67.743 512.574,69.651 C513.342,71.625 514.368,73.296 516.035,74.965 C517.703,76.634 519.376,77.658 521.349,78.425 C523.257,79.167 525.438,79.673 528.631,79.82 C531.831,79.965 532.853,80.001 541,80.001 C549.148,80.001 550.169,79.965 553.369,79.82 C556.562,79.673 558.743,79.167 560.652,78.425 C562.623,77.658 564.297,76.634 565.965,74.965 C567.633,73.296 568.659,71.625 569.425,69.651 C570.167,67.743 570.674,65.562 570.82,62.369 C570.966,59.17 571,58.147 571,50 C571,41.851 570.966,40.831 570.82,37.631"></path></g></g></g></svg></div><div style="padding-top: 8px;"> <div style="color: #3897f0; font-family: Arial, sans-serif; font-size: 14px; font-style: normal; font-weight: 550; line-height: 18px;">View this post on Instagram</div></div><div style="padding: 12.5% 0px;"></div> <div style="align-items: center; display: flex; flex-direction: row; margin-bottom: 14px;"><div> <div style="background-color: #f4f4f4; border-radius: 50%; height: 12.5px; transform: translateX(0px) translateY(7px); width: 12.5px;"></div> <div style="background-color: #f4f4f4; flex-grow: 0; height: 12.5px; margin-left: 2px; margin-right: 14px; transform: rotate(-45deg) translateX(3px) translateY(1px); width: 12.5px;"></div> <div style="background-color: #f4f4f4; border-radius: 50%; height: 12.5px; transform: translateX(9px) translateY(-18px); width: 12.5px;"></div></div><div style="margin-left: 8px;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 20px; width: 20px;"></div> <div style="border-bottom-color: transparent; border-bottom-style: solid; border-bottom-width: 2px; border-bottom: 2px solid transparent; border-left-color: rgb(244, 244, 244); border-left-style: solid; border-left-width: 6px; border-left: 6px solid #f4f4f4; border-top-color: transparent; border-top-style: solid; border-top-width: 2px; border-top: 2px solid transparent; height: 0px; transform: translateX(16px) translateY(-4px) rotate(30deg); width: 0px;"></div></div><div style="margin-left: auto;"> <div style="border-right-color: transparent; border-right-style: solid; border-right-width: 8px; border-right: 8px solid transparent; border-top-color: rgb(244, 244, 244); border-top-style: solid; border-top-width: 8px; border-top: 8px solid #F4F4F4; transform: translateY(16px); width: 0px;"></div> <div style="background-color: #f4f4f4; flex-grow: 0; height: 12px; transform: translateY(-4px); width: 16px;"></div> <div style="border-left-color: transparent; border-left-style: solid; border-left-width: 8px; border-left: 8px solid transparent; border-top-color: rgb(244, 244, 244); border-top-style: solid; border-top-width: 8px; border-top: 8px solid #F4F4F4; height: 0px; transform: translateY(-4px) translateX(8px); width: 0px;"></div></div></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center; margin-bottom: 24px;"> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; margin-bottom: 6px; width: 224px;"></div> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; width: 144px;"></div></div></a><p style="color: #c9c8cd; font-family: Arial, sans-serif; font-size: 14px; line-height: 17px; margin-bottom: 0px; margin-top: 8px; overflow: hidden; padding: 8px 0px 7px; text-align: center; text-overflow: ellipsis; white-space: nowrap;"><a href="https://www.instagram.com/reel/Cx4DpxiPJXj/?utm_source=ig_embed&utm_campaign=loading" style="color: #c9c8cd; font-family: Arial, sans-serif; font-size: 14px; font-style: normal; font-weight: normal; line-height: 17px; text-decoration: none;" target="_blank">A post shared by Jonathan Eisen (@phylogenomics)</a></p></div></blockquote> <script async="" src="//www.instagram.com/embed.js"></script>
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Day 5 - October 1, 2023.
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<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="466" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid02zaf4SnY22gecfC5chZd77RGErJ87VBhMawXjnrToLpK9cV1LnQ6PfkytgkH4BdJ7l&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe>
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<p>
<b>
</b></p><hr /><b>
Day 4 - September 30, 2023</b><p></p><p>
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<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="809" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid02rqURo37USxseLEvD91UXir656hWo7p15bTpntdW8QefvxmfQZ8Sw9sJV3xY7tMTCl&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe> </p><p><br /></p><p><br /></p><p> <iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="169" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid0UxTF5FzUE4pmrSEWq31V8WmrAytKx4nuWgD67nFjtKfXDf7XZUusfwyhQBngD9jLl&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe> </p><p><br /></p><p><b><u>Day 3 - September 29, 2023 </u></b></p><p> <iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="295" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid02CL8KSUnMHsBew2igR2WEyJLhUVKpWeTewEgXm4UKKm2PkRLXxokPM8d31zhUJ4Nxl&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe> </p><p><br /></p><p><b><u>Day 2 - September 28, 2023 </u></b></p><p> <iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="790" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid0VtBcYW3PJkw9acusTufZ7TiH4DZrqQbGx6Pz97mowr6uHsi3RPT2uVx6na3hMuXWl&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe> </p><p><br /></p><p><b><u>Day 1 - September 27, 2023.</u></b></p><p>Posted to many social media channels about my treatment with updates and other details and also got lots and lots and lots of support.</p><p>Here are some of the posts.</p>
<p>
<br /><br />
</p><p><b><u>LinkedIn</u></b></p><p><br />
<iframe allowfullscreen="" frameborder="0" height="714" src="https://www.linkedin.com/embed/feed/update/urn:li:share:7112561449113178112" title="Embedded post" width="504"></iframe></p><p><br /></p><p></p><b><u>
Facebook</u></b>
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<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="485" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid0mepRXqwtQ8GMx5w1Qnf75tboLWbZGhwhqY6HLeeMWirMe4QcGSQdYCEMmFSJaih5l&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe>
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<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="590" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid028JJmz6cfyWSVgJaYf3AatDfmsjNxEvQabMr5qv5r1TWon9JPTrDHSH8ycS4LZd81l&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe>
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<iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="371" scrolling="no" src="https://www.facebook.com/plugins/post.php?href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fposts%2Fpfbid0vSq5EJZPtK6QHUZJ8oRGWmsPnfWkr91fTVEBuoNXwasE22cGwoLNTxV8voQCCm1Fl&show_text=true&width=500" style="border: none; overflow: hidden;" width="500"></iframe>
<br /><br /><b><u>
Instagram</u></b><div><br />
<blockquote class="instagram-media" data-instgrm-captioned="" data-instgrm-permalink="https://www.instagram.com/p/Cxs2IUnRuh2/?utm_source=ig_embed&utm_campaign=loading" data-instgrm-version="14" style="background: repeat rgb(255, 255, 255); border-radius: 3px; border: 0px; box-shadow: rgba(0, 0, 0, 0.5) 0px 0px 1px 0px, rgba(0, 0, 0, 0.15) 0px 1px 10px 0px; margin: 1px; max-width: 540px; min-width: 326px; padding: 0px; width: calc(100% - 2px);"><div style="padding: 16px;"> <a href="https://www.instagram.com/p/Cxs2IUnRuh2/?utm_source=ig_embed&utm_campaign=loading" style="background: repeat rgb(255, 255, 255); line-height: 0; padding: 0px; text-align: center; text-decoration: none; width: 100%;" target="_blank"><div style="align-items: center; display: flex; flex-direction: row;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 40px; margin-right: 14px; width: 40px;"></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center;"> <div style="background-color: #f4f4f4; 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<blockquote class="instagram-media" data-instgrm-captioned="" data-instgrm-permalink="https://www.instagram.com/p/CxskR1arjrn/?utm_source=ig_embed&utm_campaign=loading" data-instgrm-version="14" style="background: repeat rgb(255, 255, 255); border-radius: 3px; border: 0px; box-shadow: rgba(0, 0, 0, 0.5) 0px 0px 1px 0px, rgba(0, 0, 0, 0.15) 0px 1px 10px 0px; margin: 1px; max-width: 540px; min-width: 326px; padding: 0px; width: calc(100% - 2px);"><div style="padding: 16px;"> <a href="https://www.instagram.com/p/CxskR1arjrn/?utm_source=ig_embed&utm_campaign=loading" style="background: repeat rgb(255, 255, 255); line-height: 0; padding: 0px; text-align: center; text-decoration: none; width: 100%;" target="_blank"> <div style="align-items: center; display: flex; flex-direction: row;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 40px; margin-right: 14px; width: 40px;"></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center;"> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; margin-bottom: 6px; width: 100px;"></div> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; width: 60px;"></div></div></div><div style="padding: 19% 0px;"></div> <div style="display: block; height: 50px; margin: 0px auto 12px; width: 50px;"><svg height="50px" version="1.1" viewbox="0 0 60 60" width="50px" xmlns:xlink="https://www.w3.org/1999/xlink" xmlns="https://www.w3.org/2000/svg"><g fill-rule="evenodd" fill="none" stroke-width="1" stroke="none"><g fill="#000000" transform="translate(-511.000000, -20.000000)"><g><path d="M556.869,30.41 C554.814,30.41 553.148,32.076 553.148,34.131 C553.148,36.186 554.814,37.852 556.869,37.852 C558.924,37.852 560.59,36.186 560.59,34.131 C560.59,32.076 558.924,30.41 556.869,30.41 M541,60.657 C535.114,60.657 530.342,55.887 530.342,50 C530.342,44.114 535.114,39.342 541,39.342 C546.887,39.342 551.658,44.114 551.658,50 C551.658,55.887 546.887,60.657 541,60.657 M541,33.886 C532.1,33.886 524.886,41.1 524.886,50 C524.886,58.899 532.1,66.113 541,66.113 C549.9,66.113 557.115,58.899 557.115,50 C557.115,41.1 549.9,33.886 541,33.886 M565.378,62.101 C565.244,65.022 564.756,66.606 564.346,67.663 C563.803,69.06 563.154,70.057 562.106,71.106 C561.058,72.155 560.06,72.803 558.662,73.347 C557.607,73.757 556.021,74.244 553.102,74.378 C549.944,74.521 548.997,74.552 541,74.552 C533.003,74.552 532.056,74.521 528.898,74.378 C525.979,74.244 524.393,73.757 523.338,73.347 C521.94,72.803 520.942,72.155 519.894,71.106 C518.846,70.057 518.197,69.06 517.654,67.663 C517.244,66.606 516.755,65.022 516.623,62.101 C516.479,58.943 516.448,57.996 516.448,50 C516.448,42.003 516.479,41.056 516.623,37.899 C516.755,34.978 517.244,33.391 517.654,32.338 C518.197,30.938 518.846,29.942 519.894,28.894 C520.942,27.846 521.94,27.196 523.338,26.654 C524.393,26.244 525.979,25.756 528.898,25.623 C532.057,25.479 533.004,25.448 541,25.448 C548.997,25.448 549.943,25.479 553.102,25.623 C556.021,25.756 557.607,26.244 558.662,26.654 C560.06,27.196 561.058,27.846 562.106,28.894 C563.154,29.942 563.803,30.938 564.346,32.338 C564.756,33.391 565.244,34.978 565.378,37.899 C565.522,41.056 565.552,42.003 565.552,50 C565.552,57.996 565.522,58.943 565.378,62.101 M570.82,37.631 C570.674,34.438 570.167,32.258 569.425,30.349 C568.659,28.377 567.633,26.702 565.965,25.035 C564.297,23.368 562.623,22.342 560.652,21.575 C558.743,20.834 556.562,20.326 553.369,20.18 C550.169,20.033 549.148,20 541,20 C532.853,20 531.831,20.033 528.631,20.18 C525.438,20.326 523.257,20.834 521.349,21.575 C519.376,22.342 517.703,23.368 516.035,25.035 C514.368,26.702 513.342,28.377 512.574,30.349 C511.834,32.258 511.326,34.438 511.181,37.631 C511.035,40.831 511,41.851 511,50 C511,58.147 511.035,59.17 511.181,62.369 C511.326,65.562 511.834,67.743 512.574,69.651 C513.342,71.625 514.368,73.296 516.035,74.965 C517.703,76.634 519.376,77.658 521.349,78.425 C523.257,79.167 525.438,79.673 528.631,79.82 C531.831,79.965 532.853,80.001 541,80.001 C549.148,80.001 550.169,79.965 553.369,79.82 C556.562,79.673 558.743,79.167 560.652,78.425 C562.623,77.658 564.297,76.634 565.965,74.965 C567.633,73.296 568.659,71.625 569.425,69.651 C570.167,67.743 570.674,65.562 570.82,62.369 C570.966,59.17 571,58.147 571,50 C571,41.851 570.966,40.831 570.82,37.631"></path></g></g></g></svg></div><div style="padding-top: 8px;"> <div style="color: #3897f0; 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border-bottom: 2px solid transparent; border-left-color: rgb(244, 244, 244); border-left-style: solid; border-left-width: 6px; border-left: 6px solid #f4f4f4; border-top-color: transparent; border-top-style: solid; border-top-width: 2px; border-top: 2px solid transparent; height: 0px; transform: translateX(16px) translateY(-4px) rotate(30deg); width: 0px;"></div></div><div style="margin-left: auto;"> <div style="border-right-color: transparent; border-right-style: solid; border-right-width: 8px; border-right: 8px solid transparent; border-top-color: rgb(244, 244, 244); border-top-style: solid; border-top-width: 8px; border-top: 8px solid #F4F4F4; transform: translateY(16px); width: 0px;"></div> <div style="background-color: #f4f4f4; flex-grow: 0; height: 12px; transform: translateY(-4px); width: 16px;"></div> <div style="border-left-color: transparent; border-left-style: solid; border-left-width: 8px; border-left: 8px solid transparent; border-top-color: rgb(244, 244, 244); border-top-style: solid; border-top-width: 8px; border-top: 8px solid #F4F4F4; height: 0px; transform: translateY(-4px) translateX(8px); width: 0px;"></div></div></div> <div style="display: flex; flex-direction: column; flex-grow: 1; justify-content: center; margin-bottom: 24px;"> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; margin-bottom: 6px; width: 224px;"></div> <div style="background-color: #f4f4f4; border-radius: 4px; flex-grow: 0; height: 14px; width: 144px;"></div></div></a><p style="color: #c9c8cd; font-family: Arial, sans-serif; font-size: 14px; line-height: 17px; margin-bottom: 0px; margin-top: 8px; overflow: hidden; padding: 8px 0px 7px; text-align: center; text-overflow: ellipsis; white-space: nowrap;"><a href="https://www.instagram.com/p/CxskR1arjrn/?utm_source=ig_embed&utm_campaign=loading" style="color: #c9c8cd; font-family: Arial, sans-serif; font-size: 14px; font-style: normal; font-weight: normal; line-height: 17px; text-decoration: none;" target="_blank">A post shared by Jonathan Eisen (@phylogenomics)</a></p></div></blockquote> <script async="" src="//www.instagram.com/embed.js"></script>
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font-family: Arial, sans-serif; font-size: 14px; font-style: normal; font-weight: 550; line-height: 18px;">View this post on Instagram</div></div><div style="padding: 12.5% 0px;"></div> <div style="align-items: center; display: flex; flex-direction: row; margin-bottom: 14px;"><div> <div style="background-color: #f4f4f4; border-radius: 50%; height: 12.5px; transform: translateX(0px) translateY(7px); width: 12.5px;"></div> <div style="background-color: #f4f4f4; flex-grow: 0; height: 12.5px; margin-left: 2px; margin-right: 14px; transform: rotate(-45deg) translateX(3px) translateY(1px); width: 12.5px;"></div> <div style="background-color: #f4f4f4; border-radius: 50%; height: 12.5px; transform: translateX(9px) translateY(-18px); width: 12.5px;"></div></div><div style="margin-left: 8px;"> <div style="background-color: #f4f4f4; border-radius: 50%; flex-grow: 0; height: 20px; width: 20px;"></div> <div style="border-bottom-color: transparent; border-bottom-style: solid; border-bottom-width: 2px; 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font-size: 15px; white-space: pre-wrap;"><a href="https://x.com/phylogenomics/status/1707059212801438207?s=20">https://x.com/phylogenomics/status/1707059212801438207?s=20</a></span></li><li><span style="background-color: white; font-size: 15px; white-space: pre-wrap;"><a href="https://x.com/phylogenomics/status/1707169906071085099?s=20">https://x.com/phylogenomics/status/1707169906071085099?s=20</a></span></li></ul><p></p>
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Sept. 26 - Nature Therapy
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Sept 25. MRI
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Blue sky: </div><span><!--more--></span><div><ul style="text-align: left;"><li>https://bsky.app/profile/phylogenomics.bsky.social/post/3kaa6euz7oo2s </li><li>https://bsky.app/profile/phylogenomics.bsky.social/post/3kaabmsieue2k </li></ul></div><div><br />
Sept 22. Nature Therapy
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BlueSky: https://bsky.app/profile/phylogenomics.bsky.social/post/3k7xfncnfsf2c
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Sept. 20 Bath therapy
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</div><p></p></div></div></div><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-48055902522873015592023-09-21T12:52:00.002-07:002023-09-21T12:58:14.619-07:00Sanger DNA sequencing services<p> <span face="Arial, sans-serif" style="font-size: 11pt; font-weight: 700; text-decoration: underline; white-space: pre-wrap;">Sanger DNA Sequencing Services</span></p><span id="docs-internal-guid-493819ff-7fff-30f6-0655-bdd912dd6f4a"><br /><p dir="ltr" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><span face="Arial, sans-serif" style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><b><u>So I posted a request to multiple social media sites:</u></b></span></p><p dir="ltr" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><b><u><span face="Arial, sans-serif" style="background-color: white; color: #050505; font-size: 11.5pt; white-space: pre-wrap;"></span></u></b></p><blockquote>Question - are there good / cheap services out there to do Sanger sequencing (e.g., for 16S / ITS for taxonomic identification of cultures)? The local Sanger operation we were using shut down.</blockquote></span><p></p><br /><p dir="ltr" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><span face="Arial, sans-serif" style="background-color: white; color: #050505; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><b><u>I posted to the following sites:</u></b></span></p><ul style="margin-bottom: 0px; margin-top: 0px; padding-inline-start: 48px;"><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://www.facebook.com/jonathaneisen/posts/pfbid0Q26ghom68RuHvJ4YWQCUxcYARRx6mkzMMTdqVBbqcW1XtUUFZMESKuZC9e7NtM9Yl?comment_id=5978453188921590&notif_id=1695235313185102&notif_t=feed_comment&ref=notif" style="text-decoration: none;"><span style="color: #1155cc; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Facebook</span></a></p></li><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://www.linkedin.com/posts/jonathaneisen_question-are-there-good-cheap-services-activity-7110331617100914688-jF7D?utm_source=share&utm_medium=member_desktop" style="text-decoration: none;"><span style="color: #1155cc; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">LinkedIn</span></a><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> </span></p></li><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://x.com/phylogenomics/status/1704565873300881445?s=20" style="text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Twitter</span></a></p></li><li aria-level="1" dir="ltr" style="font-family: Roboto, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://bsky.app/profile/phylogenomics.bsky.social/post/3k7tv553ip723" style="text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Blue Sky</span></a></p></li><li aria-level="1" dir="ltr" style="font-family: Roboto, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://fediscience.org/@phylogenomics/111098955090641946" style="text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Mastodon</span></a></p></li></ul><br /><p dir="ltr" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><span face="Arial, sans-serif" style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><b><u>These are the places that were recommended the most</u></b></span></p><ul style="margin-bottom: 0px; margin-top: 0px; padding-inline-start: 48px;"><li aria-level="1" dir="ltr" style="font-family: Roboto, sans-serif; font-size: 10.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://www.genewiz.com/en/Public/Services/Sanger-Sequencing" style="text-decoration: none;"><span style="color: #1155cc; font-size: 10.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">GENEWIZ from Azenta</span></a></p></li><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://ucberkeleydnasequencing.com/" style="text-decoration: none;"><span face="Roboto, sans-serif" style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">UC Berkeley</span></a></p></li><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://www.quintarabio.com/" style="text-decoration: none;"><span face="Roboto, sans-serif" style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Quintara</span></a></p></li><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Eurofins</span></p></li><li aria-level="1" dir="ltr" style="font-family: Arial, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; list-style-type: disc; vertical-align: baseline; white-space: pre;"><p dir="ltr" role="presentation" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><a href="https://www.mclab.com/DNA-Sequencing-Services.html" style="text-decoration: none;"><span style="background-color: #e7f3ff; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">McLab</span></a></p></li></ul><br /><p dir="ltr" style="line-height: 1.59996; margin-bottom: 0pt; margin-top: 0pt;"><span face="Arial, sans-serif" style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><b><u>These had single suggestions</u></b></span></p><span style="font-family: Arial, sans-serif; font-size: 11pt; white-space: pre-wrap;"><ul style="text-align: left;"><li><span style="font-size: 11pt;">Macrogene </span></li><li><a href="http://www.mr-dna.com/sequencing-service.html?fbclid=IwAR3vYB7zF0Kb-svDOFaRKkFLCQWAFnSWkYvCDWUqddsxIuXfLuyR2OwmKW0" style="font-size: 11pt; text-decoration: none; white-space: pre;"><span style="color: #1155cc; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">MR DNA</span></a><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline;"> </span></li><li><a href="https://www.linkedin.com/company/integrated-genomics/" style="font-family: Roboto, sans-serif; font-size: 10.5pt; text-decoration: none; white-space: pre;"><span style="color: #1155cc; font-size: 10.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Integrated Genomics</span></a><span face="Arial, sans-serif" style="font-family: Roboto, sans-serif; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline;"> </span></li><li><a href="https://functionalbio.com/" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none; white-space: pre;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Functional Bio</span></a><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline;"> </span></li><li><a href="https://azgc.arizona.edu/pricing/rates" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none; white-space: pre;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">U Az</span></a><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline;">. </span></li><li><a href="https://www.cosmosid.com/" style="background-color: white; font-family: Roboto, sans-serif; font-size: 12pt; text-decoration: none;">CosmosID</a></li><li><span style="font-size: 11pt;">Laragen</span></li><li><span style="font-size: 11pt;">Retrogen</span></li><li><span style="font-size: 11pt;">IMR</span></li><li><span style="font-size: 11pt;">Functional Biosciences</span></li></ul></span><br /><p dir="ltr" style="line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt;"><span face="Arial, sans-serif" style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><b><u>These are how the suggestions mapped to the different sites: </u></b></span></p><p role="presentation" style="font-family: Arial, sans-serif; font-size: 11pt; line-height: 1.2; margin-bottom: 0pt; margin-top: 0pt; text-align: left; white-space: pre;"></p><ul style="text-align: left;"><li><a href="https://www.facebook.com/jonathaneisen/posts/pfbid0Q26ghom68RuHvJ4YWQCUxcYARRx6mkzMMTdqVBbqcW1XtUUFZMESKuZC9e7NtM9Yl?comment_id=5978453188921590&notif_id=1695235313185102&notif_t=feed_comment&ref=notif" style="font-size: 11pt; text-decoration: none;"><span style="color: #1155cc; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Facebook</span></a></li><ul><li><span style="font-size: 11pt; white-space: pre-wrap;">Eurofins</span></li><li><a href="https://www.mclab.com/DNA-Sequencing-Services.html" style="font-size: 11.5pt; text-decoration: none;"><span style="background-color: #e7f3ff; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">McLab in south SF</span></a><span style="background-color: #e7f3ff; color: #050505; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> </span></li><li><a href="https://qb3.berkeley.edu/facili.../core-research-facilities/" style="font-size: 11pt; text-decoration: none;"><span style="color: #1155cc; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">QB3</span></a><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> </span></li><li><span style="font-size: 11pt; white-space: pre-wrap;">Macrogene </span></li><li><a href="http://www.mr-dna.com/sequencing-service.html?fbclid=IwAR3vYB7zF0Kb-svDOFaRKkFLCQWAFnSWkYvCDWUqddsxIuXfLuyR2OwmKW0" style="font-size: 11pt; text-decoration: none; white-space: pre-wrap;">MR DNA</a></li><li><span style="font-size: 11pt; white-space: pre-wrap;">Laragen</span></li><li><span style="font-size: 11pt; white-space: pre-wrap;">Retrogen</span></li><li><span style="font-size: 11pt; white-space: pre-wrap;">IMR</span></li><li><span style="font-size: 11pt; white-space: pre-wrap;">Functional Biosciences</span></li></ul><li><a href="https://www.linkedin.com/posts/jonathaneisen_question-are-there-good-cheap-services-activity-7110331617100914688-jF7D?utm_source=share&utm_medium=member_desktop" style="font-size: 11pt; text-decoration: none;"><span style="color: #1155cc; font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">LinkedIn</span></a><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> </span></li><ul><li><a href="https://www.genewiz.com/en/Public/Services/Sanger-Sequencing" style="font-family: Roboto, sans-serif; font-size: 10.5pt; text-decoration: none;"><span style="color: #1155cc; font-size: 10.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">GENEWIZ from Azenta</span></a></li><li><a href="https://www.linkedin.com/company/integrated-genomics/" style="font-size: 11pt; text-decoration: none;"><span face="Roboto, sans-serif" style="color: #1155cc; font-size: 10.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Integrated Genomics</span></a><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> </span></li></ul><li><a href="https://x.com/phylogenomics/status/1704565873300881445?s=20" style="font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Twitter</span></a></li><ul><li><span style="background-color: white; font-size: 11.5pt; white-space: pre-wrap;">Eurofins</span></li><li><a href="https://www.quintarabio.com/" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Quintara</span></a></li><li><a href="https://functionalbio.com/" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Functional Bio</span></a><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> </span></li><li><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 11.5pt; white-space: pre-wrap;">Gene Wiz (now Azenta)</span></li><li><a href="https://ucberkeleydnasequencing.com/" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">UC Berkeley</span></a></li><li><a href="https://azgc.arizona.edu/pricing/rates" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">U Az</span></a><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">.</span></li></ul><li><a href="https://bsky.app/profile/phylogenomics.bsky.social/post/3k7tv553ip723" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Blue Sky</span></a></li><ul><li><a href="https://www.googleadservices.com/pagead/aclk?sa=L&ai=C1AT4Dp0MZe-nG67j0L4PxuWimAOA_NmBcs-Dg7vQEfi1sK1KCAAQASC5VGDJhoWHyKP8GqABiKCw_wPIAQHIA9ggqgReT9D9qcFSiJICi7BANn0zCUwd-veYi5-j6HufhzbI1JId49eL_YXYaHPDDm-F6H8NiLDK7P5T3QnZrXllPbfzt4nKLOJP6dsAvDEZ31lAqh9IW_NUw0G5RRbKcORa2sAExJTgnbAEgAWQTogF1uaUnEugBlmAB-DfT4gHAZAHAagHpr4bqAe5mrECqAfz0RuoB-7SG6gH_5yxAqgHytwbqAeSr7ECqAe7pLECqAeSprECqAfYprECqAfetbECqAfbqrECqAfQqrECqAfcsLECqAfqsbECqAequLECqAeUuLECqAe-t7ECoAjJpqcEsAgB0ggaEAIyBIPggA46CMLAgICAgAQCQgEESNHs8yqaCRhodHRwczovL3d3dy5nZW5ld2l6LmNvbS-xCR-L65elZgOeuQkfi-uXpWYDnvgJAZgLAaoMAggB2gwICgMgkAESAQLoDAaqDQJVU8gNAYIUBAg9EgDQFQH4FgGAFwGSFwgSBggBEAMYPuAXAg&ae=2&gclid=Cj0KCQjw06-oBhC6ARIsAGuzdw1PJx-X5iIxOKHggwXg3ip9PjIgG9hlXi0W7HB8lww3DH3Ykt94p-caAg8uEALw_wcB&ved=2ahUKEwjQguy7u7yBAxW2KEQIHTjFCuYQ0Qx6BAgJEAE&nis=2&dct=1&cid=CAASFORoHsvUklbVs_g7TF01_AaKRJ5H&dblrd=1&sival=AF15MEC4dLGZwRf5ZEZC_4Zqc5lesIxRi1bTzY7fHxV_TrvbFK_3SLRox44bBRPFC5jshs2qK0yVgZyzDQfyKCtp93vb-GViCg_z0Uj-OzhKd57DKdo2QMXdQ6TR6wVv2SHgivMADs3z9pPyU4gnF3l7jVMbPo3A3q0lBqHxLLVqRi_Gd7Hj-KFkFcfqA6rzgfJtKrZNLUFo&sig=AOD64_3QY3odRDx5L2wu7P7xIrSyjO8o4A&adurl=https://www.genewiz.com/%3F%26%26%26utm_term%3D%26utm_campaign%3DGEN%2BNGS%2BPerformance%2BMax%26utm_source%3Dadwords%26utm_medium%3Dppc%26hsa_tgt%3D%26hsa_grp%3D%26hsa_src%3Dx%26hsa_net%3Dadwords%26hsa_mt%3D%26hsa_ver%3D3%26hsa_ad%3D%26hsa_acc%3D8363678060%26hsa_kw%3D%26hsa_cam%3D20199938068" style="font-family: Roboto, sans-serif; font-size: 12pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 12pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Azenta</span></a><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 12pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"> (used to be Genewiz)</span></li><li><a href="https://www.cosmosid.com/" style="font-family: Roboto, sans-serif; font-size: 12pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 12pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">CosmosID</span></a></li></ul><li><a href="https://fediscience.org/@phylogenomics/111098955090641946" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Mastodon</span></a></li><ul><li><span style="background-color: white; color: #0f1419; font-family: Roboto, sans-serif; font-size: 11.5pt; white-space: pre-wrap;">McLab</span></li><li><a href="https://www.quintarabio.com/" style="font-family: Roboto, sans-serif; font-size: 11.5pt; text-decoration: none;"><span style="background-color: white; color: #1155cc; font-size: 11.5pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; text-decoration-skip-ink: none; text-decoration: underline; vertical-align: baseline; white-space: pre-wrap;">Quintara</span></a></li></ul></ul><p></p><p role="presentation" style="font-family: Arial, sans-serif; font-size: 11pt; line-height: 1.59996; margin-bottom: 0pt; margin-top: 0pt; text-align: left; white-space: pre;"><span style="font-size: 11pt; font-variant-alternates: normal; font-variant-east-asian: normal; font-variant-ligatures: normal; font-variant-numeric: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"></span></p><br /><br /><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-52407771722227018542023-08-24T10:39:00.002-07:002023-08-24T10:44:20.730-07:00And today in one of the stranger uses of my work ... "130 Academic Words Ref from "Jonathan Eisen: Meet your microbes | TED Talk""<p>Well, this is certainly a bit wacky.</p><p>I was, well, Googling myself today and found this.</p><p><b><u>130 Academic Words Ref from "Jonathan Eisen: Meet your microbes | TED Talk"</u></b></p>
<iframe allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" allowfullscreen="" frameborder="0" height="315" src="https://www.youtube.com/embed/rZcb4lXUuRY?si=qj_zyoIqZ5EDRIF1" title="YouTube video player" width="560"></iframe>
<div><br /></div><div></div>
It seems like they took my Ted talk
<div style="max-width: 854px;"><div style="height: 0px; padding-bottom: 56.25%; position: relative;">
<iframe allowfullscreen="" frameborder="0" height="480" scrolling="no" src="https://embed.ted.com/talks/lang/en/jonathan_eisen_meet_your_microbes" style="height: 100%; left: 0; position: absolute; top: 0; width: 100%;" width="854"></iframe>
<div style="height: 0px; padding-bottom: 56.25%; position: relative;">and got key words from it, and then use it to teach about those words in some sort of automated way. And, well, they got a few words wrong but actually the words they chose kind of capture a lot of what my talk was about. So here are a few screenshots of some of these key words</div></div><div>
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This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-58618585058932617762023-07-23T15:35:00.001-07:002023-07-23T15:38:35.658-07:00Responses to requests for suggestions for quiet air filter for daughter's California dorm room<p> So I posted a request for suggestions on various social media sites:</p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: white; caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 17px; white-space: pre-wrap;"></span></p><blockquote>"Wanted - recommendations for good / not too expensive / not too loud air filter to get my daughter for her for a small dorm room in California (and thus to filter out pathogens, allergens and smoke ...)"</blockquote><p></p><p>I am going to compile responses here</p>
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Twitter
</b><blockquote class="twitter-tweet"><p dir="ltr" lang="en">Wanted - recommendations for good / not too expensive / not too loud air filter to get my daughter for her for a small dorm room in California (and thus to filter out pathogens, allergens and smoke ...)</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1683232537634803713?ref_src=twsrc%5Etfw">July 23, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-54757196270725127772023-06-10T12:22:00.003-07:002023-06-10T12:22:40.357-07:00Summary of responses to request for examples of data sets of microbial genomes with associated phenotypic data<p></p><blockquote></blockquote><blockquote></blockquote>So last week I posted a question to many different places as follows:<br /><blockquote>Wanted - dataset(s) to test bacterial genome analysis / annotation methods. Ideally has many genomes from collection of [interesting] bacteria with associated experimental phenotypes / metadata.</blockquote>On Linked In:<br /><ul style="text-align: left;"><li>Jonathan Jacobs:"</li><ul><li>All the reference genomes in the ATCC Genome Portal are freely available for non-commercial research purposes. They are also fully authenticated and traceable to physical production lots in our biorepository, and produced under ISO quality management. Iβm biased, but I think weβre producing the quality microbial genomes Iβve ever seen on a regular basis - so you might want to look there. Weβre producing about 100-150 new genomes every month - and many of them (about ~1/3rd) are for organisms with no preexisting genome. We have about 3,300 microbial genomes now (bacteria, viruses, fungi, protists), and all bacteria and fungi are sequenced kn both Illumina and Nanopore. Drop me an email or DM if you want to learn more or collaborate or something. Hereβs a link: <a href="https://genomes.atcc.org">https://genomes.atcc.org</a> (and hereβs a link to a comparative genomics paper we published in mSpheres earlier <a href="https://journals.asm.org/doi/full/10.1128/msphere.00077-22">https://journals.asm.org/doi/full/10.1128/msphere.00077-22</a>)"</li><li>And then "I should also add that we have tons of metadata and Iβve hired a full time data curator to help bring metadata we have in our historical records warehouse into our digital records (ie phenotypic data from routine QA/QC testing going back to the 1920sβ¦) "</li><li>Natalie Ma wrote</li><ul><li>Joint Genome Institute may have this (if you're fine with an environmental microbes focus). Adam Deutschbauer has done several Tnseq libraries for the bugs and characterized their phenotypes.</li></ul></ul></ul><div><span style="font-family: -apple-system, system-ui, BlinkMacSystemFont, Segoe UI, Roboto, Helvetica Neue, Fira Sans, Ubuntu, Oxygen, Oxygen Sans, Cantarell, Droid Sans, Apple Color Emoji, Segoe UI Emoji, Segoe UI Emoji, Segoe UI Symbol, Lucida Grande, Helvetica, Arial, sans-serif;"><span style="caret-color: rgba(0, 0, 0, 0.9); color: rgba(0, 0, 0, 0.9);"><br /></span></span></div>On Facebook:<br /><ul style="text-align: left;"><li>Eoin Brodie pointed to <a href="https://fit.genomics.lbl.gov/cgi-bin/myFrontPage.cgi">https://fit.genomics.lbl.gov/cgi-bin/myFrontPage.cgi</a></li></ul><div><div><br /></div></div><div>Also - Twitter <span style="background-color: white; white-space: pre-wrap;"><a href="https://twitter.com/phylogenomics/status/1666176311340183553?s=20">https://twitter.com/phylogenomics/status/1666176311340183553?s=20</a> </span></div><ul style="text-align: left;"><li>Amy Lee wrote: <a href="https://twitter.com/minisciencegirl/status/1666186747733061640">https://twitter.com/minisciencegirl/status/1666186747733061640</a> </li><ul><li>Would something like this help? <a href="https://t.co/J56yqW0lIT">http://m.genome.cshlp.org/content/early/2017/03/15/gr.213363.116</a> All the genomic data have been deposited and phenotype data in supplementary tables (not in PDF version).</li></ul><li>Grace Morales wrote <a href="https://twitter.com/Ungraceful_Bio/status/1666180695985897474">https://twitter.com/Ungraceful_Bio/status/1666180695985897474</a> </li><ul><li>Have you looked at using PATRIC/ BV-BRC? Theyve got a ton of different bacterial genomes available and you can search by data you'd like(AMR phenotypes, experiments done). I've pulled data for some AMR prediction work. Link: <a href="https://t.co/0NJCqM7F5Y">http://bv-brc.org</a></li></ul><li>Mike wrote <a href="https://twitter.com/mikethemadbiol/status/1666190833064849412">https://twitter.com/mikethemadbiol/status/1666190833064849412</a> </li><ul><li>This will get you a list of every Pathogen Detection isolate at NCBI with a genome and matching AST data <a href="https://t.co/Eer8RHtfei">https://ncbi.nlm.nih.gov/pathogens/isolates/#property</a>:(%22has%20AST%20phenotypes%22)</li></ul><li>Also from Grace Morales <a href="https://twitter.com/Ungraceful_Bio/status/1666480238417829891">https://twitter.com/Ungraceful_Bio/status/1666480238417829891</a></li><ul><li>Another one I thought of - PubMLST. (<a href="https://t.co/zIV1UM9O5j">http://pubmlst.org</a>)</li></ul></ul><div><span style="background-color: white; font-size: 15px; white-space: pre-wrap;"><br /></span></div><p></p><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-14163157335303005392023-05-05T14:20:00.016-07:002023-05-06T08:20:44.848-07:00Another day to think, to pause, to ponder.<table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto;"><tbody><tr><td style="text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhPJNVy4asUbuF4HOMZYPTZPz-OjzE2rxxqW_K5B5zVdJ_xzhEorZpX3TvhMw3UmYXG1yCUO3iNz4rKnuUQV04xOmnXPYob0ENqO4fHeYk-fc1uaWQZjiDDerQJftjnCOHVFW9KatQaYLzV2IuzI3pNcYV20gZa7eD8FrX8scBCAsqlAsk/s9096/20230505-IMG_2025-Pano.jpg" style="margin-left: auto; margin-right: auto;"><img border="0" data-original-height="3543" data-original-width="9096" height="184" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhPJNVy4asUbuF4HOMZYPTZPz-OjzE2rxxqW_K5B5zVdJ_xzhEorZpX3TvhMw3UmYXG1yCUO3iNz4rKnuUQV04xOmnXPYob0ENqO4fHeYk-fc1uaWQZjiDDerQJftjnCOHVFW9KatQaYLzV2IuzI3pNcYV20gZa7eD8FrX8scBCAsqlAsk/w470-h184/20230505-IMG_2025-Pano.jpg" width="470" /></a></td></tr><tr><td class="tr-caption" style="text-align: center;"><div style="text-align: left;">Panorama of Sycamore Park and the memorial to Karim</div></td></tr></tbody></table><p> </p><p><span style="background-color: #f3f3f3; font-size: medium;">A bit over 10 years ago I wrote a blog post that I repost all the time. Entitled "<a href="https://phylogenomics.blogspot.com/2013/02/a-day-to-think-to-pause-to-ponder.html">A day to think, to pause, to ponder</a>" it was posted on my dad's birthday and was about the pain of him dying, by suicide, when I was in college. It was meant as a sad, melancholy post but also one about the importance of compassion and how "we can all do a little bit to improve how we treat other." When I reposted this one time a few years ago, someone asked me if I had ever met the "Compassion Guy" who frequented downtown Davis and who had a life's mission of getting people to think about compassion. I told them, yes, indeed I had and I had talked to him on and off over the years about this topic at or near the farmer's market or at his "Compassion Corner" bench area.</span></p><p><span style="background-color: #f3f3f3; font-size: medium;">And thus, a few days ago, I was devastated when I found out that "Compassion Guy", aka David Breaux, was the person whose body was found April 27 in Central Park in downtown Davis. He had been murdered. And initial reports indicated that the Police did not have any good clues as to what had happened because there were no witnesses. </span></p><p><span style="background-color: #f3f3f3; font-size: medium;">When I found out that this was David I posted a few things to social media because I wanted to make sure people knew that he was a good person, an interesting person, and was not just some random bit of information.</span></p><p><br /></p>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Very sad and shocking. I talked to David relatively frequently <a href="https://t.co/7jLbcMtYme">https://t.co/7jLbcMtYme</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1652041109592473600?ref_src=twsrc%5Etfw">April 28, 2023</a></blockquote><p><span style="background-color: #f3f3f3; font-size: medium;">And I am glad I posted this because many people responded to also say that David had impacted them.</span></p><p><span style="background-color: #f3f3f3; font-size: medium;">For example:</span></p>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">So senselessly tragic. I saw David for years on 3rd before the compassion bench was built in his honor. A human truly loved by the Davis community. My favorite definition from his book was something like "compassion is sharing your Co-Op chocolate chip cookie with someone else". <a href="https://t.co/ENKh9kk0jx">https://t.co/ENKh9kk0jx</a></p>β Vince Buffalo (@vsbuffalo) <a href="https://twitter.com/vsbuffalo/status/1652045544548872193?ref_src=twsrc%5Etfw">April 28, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">'She recalled meeting Breaux on what she described as a βdark day,β having heard of yet another school shooting in the U.S. <br /><br />βI was just feeling very negative,β Tafoya said. βWe sat and we talked, and he made me realize that going out there and doing something was compassion.β <a href="https://t.co/XIDHNaWjJG">https://t.co/XIDHNaWjJG</a></p>β Ted Hand (@t3dy) <a href="https://twitter.com/t3dy/status/1652100964269326336?ref_src=twsrc%5Etfw">April 29, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<p><br /></p><p><span style="background-color: #f3f3f3; font-size: medium;">I also posted this to other places, like Facebook, and there I found out that Nat Pearson, who I had known since I was a PhD student at Stanford and he was and undergrad there, had been a first year dorm mate of David's and also had wonderful things to say about him.</span></p><p><span style="background-color: #f3f3f3; font-size: medium;">I had planned to go visit "Compassion Corner" on Saturday during my regular bike outing to the Farmer's market but alas I could not since I had to go to UC Davis Medical Center for an MRI.</span></p><p><br /></p><blockquote class="twitter-tweet"><p dir="ltr" lang="en">Thanks once again <a href="https://twitter.com/UCDRadiology?ref_src=twsrc%5Etfw">@UCDRadiology</a> for excellent service / care - quick in / quick out - all personnel excellent - and also happy to see mask requirement still in place <a href="https://t.co/kEY9gUVM55">https://t.co/kEY9gUVM55</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1652375401325535234?ref_src=twsrc%5Etfw">April 29, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script><div><br /></div><span style="background-color: #f3f3f3; font-size: medium;">
And then late Saturday night our town was hit again.
</span><blockquote class="twitter-tweet"><p dir="ltr" lang="en">Suspect description from Davis PD:<br />- Lightskin male <br />- Height: 5β7-5β8<br />- 19-23 years of age<br />- Long curly loose hair<br />- Last seen wearing a white hat & a light colored t-shirt <br />- Riding a bike with straight handle bars<a href="https://twitter.com/cityofdavispd?ref_src=twsrc%5Etfw">@cityofdavispd</a> <a href="https://twitter.com/FOX40?ref_src=twsrc%5Etfw">@FOX40</a> <a href="https://t.co/CIWg3vCDib">https://t.co/CIWg3vCDib</a></p>β Zach Boetto (@FOX40Zach) <a href="https://twitter.com/FOX40Zach/status/1652575131829702657?ref_src=twsrc%5Etfw">April 30, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And soon we found out that the victim was a UC Davis student - Karim Majdi Abou Najm</span>
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Davis Enterprise (via <a href="https://twitter.com/laurenkeene?ref_src=twsrc%5Etfw">@laurenkeene</a>) is reporting additional details on the fatal stabbing of a 20 year-old male in Sycamore Park in Davis. <a href="https://t.co/5KGMmDIFnb">https://t.co/5KGMmDIFnb</a> <a href="https://t.co/QnMsvos82A">pic.twitter.com/QnMsvos82A</a></p>β Anthony Volkar (@ucdvolkie) <a href="https://twitter.com/ucdvolkie/status/1652797002563059713?ref_src=twsrc%5Etfw">April 30, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">This is Karim Abou-Najim. He is the victim in the deadly stabbing at Sycamore Park in Davis. Family friends tell us he was riding his bike home from his award ceremony for his research work. The 20-year-old was graduating in just 10 days from UC Davis. <a href="https://twitter.com/CBSSacramento?ref_src=twsrc%5Etfw">@CBSSacramento</a> <a href="https://t.co/BEKmE6xnyT">pic.twitter.com/BEKmE6xnyT</a></p>β Tori Apodaca (@tori_apodaca) <a href="https://twitter.com/tori_apodaca/status/1652846417478815744?ref_src=twsrc%5Etfw">May 1, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And this was of course horrific. A second murder in this sleepy town of Davis. And a UC Davis student. And for me, someone who I had multiple direct and indirect connections to. Just horrific.<br /><br />
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<blockquote class="twitter-tweet"><p dir="ltr" lang="art">π’π’π’π’π’π’π’ <a href="https://t.co/2jXFSDxIh6">https://t.co/2jXFSDxIh6</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1652851110821126145?ref_src=twsrc%5Etfw">May 1, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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I decided that some NatureTherapy for me and others might be useful. <br /><br />
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">It is a sad and scary time right now in <a href="https://twitter.com/hashtag/davisca?src=hash&ref_src=twsrc%5Etfw">#davisca</a> and at <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> due to recent murders. I thought some <a href="https://twitter.com/hashtag/naturetherapy?src=hash&ref_src=twsrc%5Etfw">#naturetherapy</a> might be useful for me and others. From the <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> Arboretum <a href="https://t.co/lK97RdV8VH">https://t.co/lK97RdV8VH</a> <a href="https://t.co/cSquRgaaGd">pic.twitter.com/cSquRgaaGd</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653076163126861825?ref_src=twsrc%5Etfw">May 1, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Stunning sight at <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> Riparian Preserve this AM. Male Western Tanager with snack. Some <a href="https://twitter.com/hashtag/NatureTherapy?src=hash&ref_src=twsrc%5Etfw">#NatureTherapy</a> for a wounded university at town. <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> <a href="https://t.co/FLet4dDzqN">https://t.co/FLet4dDzqN</a> <a href="https://t.co/FNrKNJZQ09">pic.twitter.com/FNrKNJZQ09</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653099949033152515?ref_src=twsrc%5Etfw">May 1, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Really feeling sad about the recent murders in <a href="https://twitter.com/hashtag/davisca?src=hash&ref_src=twsrc%5Etfw">#davisca</a> - thinking of the two people who were killed and all their families, friends, and colleagues - spent a lot of the day in nature thinking of them - here is some <a href="https://twitter.com/hashtag/naturetherapy?src=hash&ref_src=twsrc%5Etfw">#naturetherapy</a> from <a href="https://twitter.com/hashtag/yolobypass?src=hash&ref_src=twsrc%5Etfw">#yolobypass</a> <a href="https://t.co/0cfi5uEEN9">pic.twitter.com/0cfi5uEEN9</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653206173452222464?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Been a rough few days here in <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> so I spent much of the day out in nature trying to rebalance. At the end of the day I was driving home and took a little detour on a rural farm road in <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> and saw this guy. Blue Grosbeak. Not a bad ending to my day of <a href="https://twitter.com/hashtag/NatureTherapy?src=hash&ref_src=twsrc%5Etfw">#NatureTherapy</a>. <a href="https://t.co/Hi5ljBOtnu">https://t.co/Hi5ljBOtnu</a> <a href="https://t.co/oCzlBNOGiD">pic.twitter.com/oCzlBNOGiD</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653239018979721216?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And these got some nice responses that indicated they helped some other people out there. And then in the middle of the night we got a phone call and multiple text messages telling us there was a third stabbing.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Just got this alert - report of another stabbing in <a href="https://twitter.com/hashtag/davisca?src=hash&ref_src=twsrc%5Etfw">#davisca</a> <a href="https://t.co/ClTQcwC1Ty">pic.twitter.com/ClTQcwC1Ty</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653307743711920128?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And despite a shelter in place order the suspect got away
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Third stabbing in Davis β suspect eludes manhunt after shelter-in-place downtown, at UC Davis <a href="https://t.co/MmQ8g8tmlE">https://t.co/MmQ8g8tmlE</a></p>β Marcos Breton (@MarcosBreton) <a href="https://twitter.com/MarcosBreton/status/1653390304635146240?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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Later we found out that the victim fortunately survived but was seriously wounded.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Meeting is back on.<br /><br />The victim from last night's stabbing, the police chief says, underwent surgery but is awake, alert and talking. She is in critical condition but making progress, he said. <br /><br />More: <a href="https://t.co/z6lU2liJWi">https://t.co/z6lU2liJWi</a> <a href="https://twitter.com/kcranews?ref_src=twsrc%5Etfw">@kcranews</a></p>β KCRA Lee Anne Denyer (@KCRALeeAnne) <a href="https://twitter.com/KCRALeeAnne/status/1653578720177958912?ref_src=twsrc%5Etfw">May 3, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script><span style="font-size: medium;">
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And all around town and at UC Davis people were justifiably both devastated and scared. So for the class I am currently teaching, we put into place every measure we could to let students NOT have to come to class in the wake of such incidents. And despite UC Davis focusing on only nighttime safety, some of us also understood that students might be afrain in the day time too (with good reason I might add)</span>.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">To everyone in the <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> and <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> area, be careful out there. But also, while attacks have happened at nighttime, <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> & <a href="https://twitter.com/cityofdavispd?ref_src=twsrc%5Etfw">@cityofdavispd</a> should also be emphasizing at least some caution and extra protections during daytime until the person(s)responsible are caught <a href="https://t.co/4ftKlDf6HL">https://t.co/4ftKlDf6HL</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653458363412549632?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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That morning I went out for some #NatureTherapy again but this time decided to not go to too isolated a place on campus and went off campus:
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">A little more <a href="https://twitter.com/hashtag/naturetherapy?src=hash&ref_src=twsrc%5Etfw">#naturetherapy</a> from Putah Creek <a href="https://t.co/3bZnWJw8Ef">https://t.co/3bZnWJw8Ef</a> <a href="https://t.co/FL9yWPoKcj">pic.twitter.com/FL9yWPoKcj</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653474695281545216?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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I then went to "Compassion Corner" to pay tribute to David. I took some pics and posted them.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">At Compassion Corner in <a href="https://twitter.com/hashtag/DavisCa?src=hash&ref_src=twsrc%5Etfw">#DavisCa</a> thinking of David Breaux and the many many many times I saw him here over the years - RIP Compassion Guy <a href="https://t.co/5z2Esiy3A5">pic.twitter.com/5z2Esiy3A5</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653500032430247936?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And also made a video panorama
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<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="it">Video panorama of Compassion Corner <a href="https://t.co/Wdu6QpUNhT">pic.twitter.com/Wdu6QpUNhT</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653500981911629827?ref_src=twsrc%5Etfw">May 2, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script><span style="background-color: #f3f3f3; font-size: medium;"><div><span style="background-color: #f3f3f3; font-size: medium;">A few other pics from the memorial</span></div><div><span style="background-color: #f3f3f3; font-size: medium;"><br /></span></div><div><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEj0hKfb1DR_Rdgbo9js4QmYnmJbQmxY-dck8EMS61cu1RW1JDAAJ3XBxaMa3mA-2SMuuu8_TYhpR_mqew1-43AuL6l_PZyo97c93TPV8TTJQ9qMlgfaRe0rcNFVcNqnE_qxCTxETM022EGKG-I2q6TvzgdJRjk8-yZCz9WBpSwz9mIEADI/s4032/2023_05_02-13_30_16-IMG_1941-stars.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEj0hKfb1DR_Rdgbo9js4QmYnmJbQmxY-dck8EMS61cu1RW1JDAAJ3XBxaMa3mA-2SMuuu8_TYhpR_mqew1-43AuL6l_PZyo97c93TPV8TTJQ9qMlgfaRe0rcNFVcNqnE_qxCTxETM022EGKG-I2q6TvzgdJRjk8-yZCz9WBpSwz9mIEADI/s320/2023_05_02-13_30_16-IMG_1941-stars.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiRd7MtC5tSQucGbLNn9_tYI-uhE16Yg0312Hz0N3xXkJeb-kHY5zBxfcBlZC5OU7W7upuI-S95fccb_qwwxb8Tv66EOQUBdGsBjbeoJluPw8mA6wp2uUSSHAuv-fN81WF1WCJwMaxGnTS5PhZWTpQr38N39rhsjPKecJW1FcnlxBQcFxg/s4032/2023_05_02-13_36_28-IMG_1954-stars.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiRd7MtC5tSQucGbLNn9_tYI-uhE16Yg0312Hz0N3xXkJeb-kHY5zBxfcBlZC5OU7W7upuI-S95fccb_qwwxb8Tv66EOQUBdGsBjbeoJluPw8mA6wp2uUSSHAuv-fN81WF1WCJwMaxGnTS5PhZWTpQr38N39rhsjPKecJW1FcnlxBQcFxg/s320/2023_05_02-13_36_28-IMG_1954-stars.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEi7ocyTRJvUvPh0SWDZpoD_rBLQnmWFZvk-33rLFzjPx9VdOgc7mNwQDPFGcgsaszNfzAcU2KYuxAC31CFpvxClSLo8Jzpbt2yi6nOJ8bEgcvXDZtuPjYIIokhYX1s17XQXBT0TzuNkknCamrkX0KRzUOM35vGYOFOT7mqOQ-Mhii9ZZkw/s4032/2023_05_02-13_36_32-IMG_1955-stars.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEi7ocyTRJvUvPh0SWDZpoD_rBLQnmWFZvk-33rLFzjPx9VdOgc7mNwQDPFGcgsaszNfzAcU2KYuxAC31CFpvxClSLo8Jzpbt2yi6nOJ8bEgcvXDZtuPjYIIokhYX1s17XQXBT0TzuNkknCamrkX0KRzUOM35vGYOFOT7mqOQ-Mhii9ZZkw/s320/2023_05_02-13_36_32-IMG_1955-stars.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhuCiuIc5IH6JYT_8_ajalT40Cq-a_IfGKTSWDJsTS6KodCUJdCBn2Pa9GpfsKuR3HRMLr6CAoCzaTzWcNfSv1IRS8IIeV7CEt0UvJ9cdaGH5bQQxbOIHGEVoqHq63dT1j0HiceIPoHDEyEX0vYD1HN8PuggliATENeyPHlV4yxLBxxAb0/s4032/2023_05_02-13_36_36-IMG_1956-stars.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhuCiuIc5IH6JYT_8_ajalT40Cq-a_IfGKTSWDJsTS6KodCUJdCBn2Pa9GpfsKuR3HRMLr6CAoCzaTzWcNfSv1IRS8IIeV7CEt0UvJ9cdaGH5bQQxbOIHGEVoqHq63dT1j0HiceIPoHDEyEX0vYD1HN8PuggliATENeyPHlV4yxLBxxAb0/s320/2023_05_02-13_36_36-IMG_1956-stars.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEi0nIPZR5br-CAHKQCyYwQcq5kd1g3eyspiiAoZ7O5P2iSOozFDIlRQv29LTXZnr-wTsvK9TC5lbmIbEcQ29fAcVZ_cTzoN_8GU8ZvZEcFy2O4l1Q1K6Ay74s38yGvCpCZLSHQl0p7S1o6IIzFyjKou0pWhnRvdRv4xKlamA5D3emnyg3U/s4032/2023_05_02-13_36_40-IMG_1957-stars.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEi0nIPZR5br-CAHKQCyYwQcq5kd1g3eyspiiAoZ7O5P2iSOozFDIlRQv29LTXZnr-wTsvK9TC5lbmIbEcQ29fAcVZ_cTzoN_8GU8ZvZEcFy2O4l1Q1K6Ay74s38yGvCpCZLSHQl0p7S1o6IIzFyjKou0pWhnRvdRv4xKlamA5D3emnyg3U/s320/2023_05_02-13_36_40-IMG_1957-stars.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; 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margin-right: 1em;"><img border="0" data-original-height="4032" data-original-width="3024" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhHLwUmdsc865Dpyb0BqAUUOpRNsV3WLDqpsFa69ayGa_jjqDtiMYdAttvZ_UkqLBTwVhxnWrXWLvVGlUae2wjfOzLpRMw5LKPLiijzdAlHJ7RzH8ln43pBsNO5wq80CTQJutEuF5GRDsoV9C0cw2JLent6bxP-hBHLpNoFq6C5b_zRWxo/s320/2023_05_02-13_38_09-IMG_1963-stars.jpg" width="240" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgZahGxxQXlBz8E6SyrZGZLsUC9ceo8It6lVMtqRpDqb16yOFllrEEdh2T7ShzJ7ibphLQYRAm_ACPnTJO-PHhp4XgftrNklFLXaMSiznd3flRWctmVdhOvK2BmPFr1-7xKuPhYQbn7TBUEJ-ZGSsNG_1h2mvtqXck6hx39S684v5-aYj4/s4032/2023_05_02-13_38_15-IMG_1964-stars.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="4032" data-original-width="3024" height="320" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgZahGxxQXlBz8E6SyrZGZLsUC9ceo8It6lVMtqRpDqb16yOFllrEEdh2T7ShzJ7ibphLQYRAm_ACPnTJO-PHhp4XgftrNklFLXaMSiznd3flRWctmVdhOvK2BmPFr1-7xKuPhYQbn7TBUEJ-ZGSsNG_1h2mvtqXck6hx39S684v5-aYj4/s320/2023_05_02-13_38_15-IMG_1964-stars.jpg" width="240" /></a></div><br /><span style="background-color: #f3f3f3; font-size: medium;"><br /></span></div><div><span style="background-color: #f3f3f3; font-size: medium;"><br /></span></div><div><span style="background-color: #f3f3f3; font-size: medium;"><br /></span></div>
Then on May 3 there was an extended period where we heard helocopters overhead. I took some pics and found out one was from KCRA.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Helicopter from <a href="https://twitter.com/kcranews?ref_src=twsrc%5Etfw">@kcranews</a> flying over <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> right now - not sure what it is doing ... <a href="https://t.co/ikSbateQjN">pic.twitter.com/ikSbateQjN</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653923362446659584?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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Turns out, they were watching overhead as police were questioning a person of interest who had been caught near Sycamore Park and was eventually broungt in to be interviewed.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Person of interest in Davis stabbings detained, police say <a href="https://t.co/a7KIa4g8kU">https://t.co/a7KIa4g8kU</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653924146542424064?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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Meanwhile, a fund had been set up in honor of Karim and I donated to it and suggested other do so too.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">I encourage everyone to donate to this fund in honor of <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> undergrad Karim Majdi Abou Najm who was killed last week in <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a><br /><br />Memorial Undergraduate Student Research Award <a href="https://t.co/c1gV0ZuCe9">https://t.co/c1gV0ZuCe9</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1653994128290746368?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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This was when I found out that Nadine Yehya, who I knew from various science communications functions and from Twitter interactions was Karim's mother.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Thank you Johnathan for donating and keeping his legacy alive. Karim is my son who was taken from us all prematurely</p>β Nadine Yehya, PhD (@yehya_nadine) <a href="https://twitter.com/yehya_nadine/status/1654073957493149698?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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I went back out for more #NatureTherapy for myself and to share
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Still spending a lot of time in nature trying to process everything happening in <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> and thinking of the stabbing victims and their families and friends. Tuesday I drove around with my daughter at dusk and got a nice pic of an owl in rural <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> <a href="https://t.co/xh5dlDB2Ey">https://t.co/xh5dlDB2Ey</a> <a href="https://t.co/g5e0qj0r8l">pic.twitter.com/g5e0qj0r8l</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654126708679929865?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And I then went to the memorial for Karim in Sycamore Park and tried to get some nice pics there.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">I went by the memorial for Karim in Sycamore Park in <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> today. So very sad but also moving. Thinking of Karim and his family and friends today. <br /><br />Please consider donating the the fund to create a <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> Undergraduate Student Research Award in his honor (see below). <a href="https://t.co/uOtIKI2Tzz">https://t.co/uOtIKI2Tzz</a> <a href="https://t.co/sTiOUM4DK0">pic.twitter.com/sTiOUM4DK0</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654178232168480774?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And I also did some iNaturalist observations with the goal of setting up a project in the area in honor of Karim.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">When I went to Sycamore Park this AM to visit the memorial for Karim Majdi Abou Najm I also decided to do a little <a href="https://twitter.com/hashtag/naturetherapy?src=hash&ref_src=twsrc%5Etfw">#naturetherapy</a> for myself and to share. It was pretty dark out so pics aren't great but here are a few: bushtit, house finch, Anna's hummingbird, black phoebe. <a href="https://t.co/3Ma9lVOWcT">https://t.co/3Ma9lVOWcT</a> <a href="https://t.co/0YAn45mFxQ">pic.twitter.com/0YAn45mFxQ</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654250235097661440?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script><span style="font-size: medium;">
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And then later in the day we found out the promising news</span>:</span>
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Breaking news: Davis police will announce arrest in series of brutal stabbings this afternoon. <a href="https://t.co/DJDY1GblBc">https://t.co/DJDY1GblBc</a></p>β The Sacramento Bee (@sacbee_news) <a href="https://twitter.com/sacbee_news/status/1654169151265439763?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Well this sounds like amazing news - arrest in <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> stabbings <a href="https://t.co/lOCRTMtc6l">https://t.co/lOCRTMtc6l</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654181948267323393?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And important comment from Nat Pearson
</span><blockquote class="twitter-tweet"><p dir="ltr" lang="en">Hope for a Davis community gripped by violence and fear.<br /><br />And a reminder: victim David Breaux, longtime friend to many of us there and beyond, would (and tirelessly did) seek <a href="https://twitter.com/hashtag/transformativejustice?src=hash&ref_src=twsrc%5Etfw">#transformativejustice</a>. <a href="https://t.co/tPkRu2ezP6">https://t.co/tPkRu2ezP6</a> <a href="https://t.co/8Me2iTujqB">pic.twitter.com/8Me2iTujqB</a></p>β Nathan Pearson (@GenomeNathan) <a href="https://twitter.com/GenomeNathan/status/1654190629847552002?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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I responded to it:
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">I spent about an hour at / near his corner yesterday thinking about David and trying to channel his compassion <a href="https://t.co/nRW3ilCmgG">https://t.co/nRW3ilCmgG</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654191121411743745?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And also noted that I had started making iNaturalist observations there too:
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">And I also started making <a href="https://twitter.com/inaturalist?ref_src=twsrc%5Etfw">@inaturalist</a> observations at that site - seemed like something he would have liked <a href="https://t.co/ovAX9jkxTb">https://t.co/ovAX9jkxTb</a> and I will keep doing them regularly</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654192072772190208?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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And some additional details stated trickling out
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Important details on <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> stabbing arrest h/t <a href="https://twitter.com/peiferlabunc?ref_src=twsrc%5Etfw">@peiferlabunc</a> <a href="https://t.co/Qh5Gbde4ub">https://t.co/Qh5Gbde4ub</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654209047447605249?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">See details on the press conference regarding the arrest in the <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> stabbing cases <a href="https://t.co/d1YejFKE10">https://t.co/d1YejFKE10</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654232858016505856?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Person arrested is s 21 year old Carlos Dominguez of <a href="https://twitter.com/hashtag/DavisCA?src=hash&ref_src=twsrc%5Etfw">#DavisCA</a> and was a student at <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> until last week according to the police chief</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654233936489496576?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Well I just want to say - thank you to the <a href="https://twitter.com/cityofdavispd?ref_src=twsrc%5Etfw">@cityofdavispd</a> <a href="https://twitter.com/UCDavisPolice?ref_src=twsrc%5Etfw">@UCDavisPolice</a> <a href="https://twitter.com/FBI?ref_src=twsrc%5Etfw">@FBI</a> and all the witnesses and people who helped catch this person. <a href="https://t.co/xgPAIaXxAj">https://t.co/xgPAIaXxAj</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654240613439770624?ref_src=twsrc%5Etfw">May 4, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<span style="background-color: #f3f3f3; font-size: medium;">
And that is how we get to today.
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<blockquote class="twitter-tweet"><p dir="ltr" lang="en">I went by the memorials for Karim and David this AM and the sun was shining, birds were singing and it felt like some sort of renewal. Here are some pics - more later <a href="https://t.co/3Ma9lVOWcT">https://t.co/3Ma9lVOWcT</a> <a href="https://t.co/db3VrmGb5Y">pic.twitter.com/db3VrmGb5Y</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654545684371247104?ref_src=twsrc%5Etfw">May 5, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<span style="background-color: #f3f3f3; font-size: medium;">
I note - I went to see if there was anything in terms of public displays at the site of the third stabbing but did not see anything. The woman who was stabbed is Kimberlee Guillory and I would like to at some point also pay tribute in some way to her. </span><div><span style="background-color: #f3f3f3; font-size: medium;"><br /></span></div><div><span style="background-color: #f3f3f3; font-size: medium;">At the memorials sites for David and Karim, I took a bunch of nature / landscape pics and also posted observations to iNaturalist.
</span>
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<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">I made some additional nature observations at each site - going to try to keep doing this regularly as a tribute to both of them - and am posting them to iNaturalist - here is my favorite from from today near Karim's memorial <a href="https://t.co/5rDNGhC8ak">https://t.co/5rDNGhC8ak</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654593645746724867?ref_src=twsrc%5Etfw">May 5, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">Also see <a href="https://t.co/cnZ1YRhGlZ">https://t.co/cnZ1YRhGlZ</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654593745759899648?ref_src=twsrc%5Etfw">May 5, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="und">And <a href="https://t.co/9f2uQFfkBn">https://t.co/9f2uQFfkBn</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654593826500247552?ref_src=twsrc%5Etfw">May 5, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">And also made some observations from near Compassion Corner / David's memorial such as this nice mushroom <a href="https://t.co/MGDRxWjftK">https://t.co/MGDRxWjftK</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654594080603770880?ref_src=twsrc%5Etfw">May 5, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">And this Swainson's hawk was flying overhead <a href="https://t.co/GteADTqDuT">https://t.co/GteADTqDuT</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1654594211940020226?ref_src=twsrc%5Etfw">May 5, 2023</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
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<span style="background-color: #f3f3f3; font-size: medium;">
Basically, I want to make sure that people do not forget Karim and David. They were wonderful people. They were taken from us too soon in a terrible way. But we can get some good out of this. And I will try my best to contribute to that.
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<a name='more'></a></span><div><br /></div><span style="background-color: #f3f3f3; font-size: medium;">A few other pics from the memorial to Karim</span><div><br /></div><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgwyGWbmrd3vOvlKrdY7YWd2IgontzPPUvJmnhecBlsPZQdSdNAcwYtV9iO6QkGt2Ga-TJGcKekzm6iDVmBRBT_r34YCyjJkW8VGe4uDvmGCt_mHxFRSC71rXDZqZejLCnTsxuFAWac7dUMJUXs_WhNIGBe7s8S5u1NRl7Ca4OxstXaClQ/s4032/20230505-IMG_2011.jpg" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgwyGWbmrd3vOvlKrdY7YWd2IgontzPPUvJmnhecBlsPZQdSdNAcwYtV9iO6QkGt2Ga-TJGcKekzm6iDVmBRBT_r34YCyjJkW8VGe4uDvmGCt_mHxFRSC71rXDZqZejLCnTsxuFAWac7dUMJUXs_WhNIGBe7s8S5u1NRl7Ca4OxstXaClQ/s320/20230505-IMG_2011.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjMGny3IKQPaRrFCtc6WFJ7zOzjFY-U3jZO_6ZF4pxEDEioo-QYQK_6Lz7XIuIE7V26ZRQHSOjpMmCKCF4hs_mdt7s0mTzKu_Tx0wgeJOAVkOWRC9fS-q6BeJPP4YRodArSP4hr9PJdKck5tvMFVaSPpMHeWvtZnAcLGoebM5F9w9MdOMg/s4032/20230505-IMG_2012.jpg" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjMGny3IKQPaRrFCtc6WFJ7zOzjFY-U3jZO_6ZF4pxEDEioo-QYQK_6Lz7XIuIE7V26ZRQHSOjpMmCKCF4hs_mdt7s0mTzKu_Tx0wgeJOAVkOWRC9fS-q6BeJPP4YRodArSP4hr9PJdKck5tvMFVaSPpMHeWvtZnAcLGoebM5F9w9MdOMg/s320/20230505-IMG_2012.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhCQKERG2Kik8Pzfa-qu18VrXuIcBtJWy-JGjKmCe9-X9mYp1EbUpWTtcu4ItYKtRlBFEJacpmHxu2fWKQOE28Jx8dICYt6auX6w9LDcf3yJokn01vC_SQJd5_gngyg-ZwH-ropniPvoeXPlCVKkY-G2jJdQ1kAyZDRPyDADHiio6lQ5T8/s4032/20230505-IMG_2014.jpg" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhCQKERG2Kik8Pzfa-qu18VrXuIcBtJWy-JGjKmCe9-X9mYp1EbUpWTtcu4ItYKtRlBFEJacpmHxu2fWKQOE28Jx8dICYt6auX6w9LDcf3yJokn01vC_SQJd5_gngyg-ZwH-ropniPvoeXPlCVKkY-G2jJdQ1kAyZDRPyDADHiio6lQ5T8/s320/20230505-IMG_2014.jpg" width="320" /></a></div><br /><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjBjgJr251lK1RhP6S5YyCYvO1BvNllYvaRuOmf7Zoj8kQkvlkWM0QXOoTVBChSky9ffgtZH5MrnQGzyqDconN3hBD2XNktjp2TzZpxO6ufHYLji_Pda7ipDqeSybEHDyKkrLv5OFp3dGw29iaqmkU0yY2dIxtA6nlHg66mFGMQVSJ5EfQ/s4032/20230505-IMG_2015.jpg" style="margin-left: 1em; margin-right: 1em;"><img border="0" data-original-height="3024" data-original-width="4032" height="240" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjBjgJr251lK1RhP6S5YyCYvO1BvNllYvaRuOmf7Zoj8kQkvlkWM0QXOoTVBChSky9ffgtZH5MrnQGzyqDconN3hBD2XNktjp2TzZpxO6ufHYLji_Pda7ipDqeSybEHDyKkrLv5OFp3dGw29iaqmkU0yY2dIxtA6nlHg66mFGMQVSJ5EfQ/s320/20230505-IMG_2015.jpg" width="320" /></a></div><br /><div><br /><br /></div><div><span style="font-size: medium;"><span style="background-color: #f3f3f3;"><br /></span></span></div><div><span style="font-size: medium;"><span style="background-color: #f3f3f3;"><br /></span></span></div><div><span style="font-size: medium;"><span style="background-color: #f3f3f3;"><br /></span></span><div><br /></div><div><br /></div></div><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-49352853991107896742023-04-03T19:11:00.007-07:002023-04-03T19:18:57.615-07:00Responses to question about functional annotation of metagenomic reads<p></p><div class="separator" style="clear: both; text-align: center;"><br /></div>Posted a question to a few places
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Hi. We would like to functionally annotate some metagenomic sequencing reads without doing any assembly or binning or read mapping to reference genomes. Just annotate by searching things like nr, PFAM, COGs, etc. Anyone know of tools that do this?</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1641162826457956352?ref_src=twsrc%5Etfw">March 29, 2023</a></blockquote><span><a name='more'></a></span><p><b><u><br /></u></b></p><b><u>Humann suggestion</u></b><p><b><u><br /></u></b></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEj9uq5TCiBehlQ7876-KE4N2-rxY6bJDJ-OjhzC1noYrDEfjz6NYRj7w94B-ip89X5DeL2ti8sNki3OvpFTrGzxH93JVaw7Ns6n9REYMGmTXsS7eO9AtsEUGIMzdTkJ1cqxUtxCfyh1pLEDdpKPkciUcBVTXtVhOCLhpb8p_tf04AIhnE-zEBJ8Lw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1092" data-original-width="1580" height="221" src="https://blogger.googleusercontent.com/img/a/AVvXsEj9uq5TCiBehlQ7876-KE4N2-rxY6bJDJ-OjhzC1noYrDEfjz6NYRj7w94B-ip89X5DeL2ti8sNki3OvpFTrGzxH93JVaw7Ns6n9REYMGmTXsS7eO9AtsEUGIMzdTkJ1cqxUtxCfyh1pLEDdpKPkciUcBVTXtVhOCLhpb8p_tf04AIhnE-zEBJ8Lw" width="320" /></a></div><br /> <p></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><b><u><br /> fraggenescan on the raw reads, then use hmmer w/ pfam-A or kegg hmm.</u></b><div><b><u><br /></u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEiKy0TfsmY2mnUCY_O1m5F87YyCT5UL5fR8aKnB9_oGqcWc4_wkKTpjuJU_EpAByRHhoOyJdLPbNz9NUxEZb3g6SYe_3VW0RyQwUZtPIAUZ4dRtDmo3OIzg79B2l6eElx4CWbuKtQLf1DmUanlh13EU2tOUlsvo28la7pHaTGR5d91AJf3Plj6_hA" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="754" data-original-width="1568" height="154" src="https://blogger.googleusercontent.com/img/a/AVvXsEiKy0TfsmY2mnUCY_O1m5F87YyCT5UL5fR8aKnB9_oGqcWc4_wkKTpjuJU_EpAByRHhoOyJdLPbNz9NUxEZb3g6SYe_3VW0RyQwUZtPIAUZ4dRtDmo3OIzg79B2l6eElx4CWbuKtQLf1DmUanlh13EU2tOUlsvo28la7pHaTGR5d91AJf3Plj6_hA" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><b><u><br /></u></b><div><b><u>EggNog Mapper</u></b><br /><div><b><u><br /></u></b></div><div><b><u><br /></u></b><p><b><u><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></u></b></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEgUE427XYpzivSSkRf2fYHiID2bg_QyCQNeG7XqTgzTzVsTvYr_s8_POg8GJaoY9qr7tbx22VSXmOiNaB01QFEI6uUhNzFARNJwMIX_dMIsl8U2ZE6hyRv6tUBoerqmPaEaoMLjC-djE5QUdXKgP2cRYpp3HTYysYCSQryZnMU8-Oh1y3_GMNSJCg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="460" data-original-width="1568" height="94" src="https://blogger.googleusercontent.com/img/a/AVvXsEgUE427XYpzivSSkRf2fYHiID2bg_QyCQNeG7XqTgzTzVsTvYr_s8_POg8GJaoY9qr7tbx22VSXmOiNaB01QFEI6uUhNzFARNJwMIX_dMIsl8U2ZE6hyRv6tUBoerqmPaEaoMLjC-djE5QUdXKgP2cRYpp3HTYysYCSQryZnMU8-Oh1y3_GMNSJCg" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEj2dfY5Y-E3AFLdACDabSS5euau-vu9d82eNBUKISaoF2HqmbtvP6SbLCW3EGSeAKMnBknKvdCqoWSK92OEDEKt7PlCP68Er_ZyGE8NiiatVqjAjnxiChA-SOrD80EnnNWSeJaBZ3evgw9IamMJ2edterd275gltHAkfn4zHdwf3u5lrotc0TmrYg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="284" data-original-width="1516" height="60" src="https://blogger.googleusercontent.com/img/a/AVvXsEj2dfY5Y-E3AFLdACDabSS5euau-vu9d82eNBUKISaoF2HqmbtvP6SbLCW3EGSeAKMnBknKvdCqoWSK92OEDEKt7PlCP68Er_ZyGE8NiiatVqjAjnxiChA-SOrD80EnnNWSeJaBZ3evgw9IamMJ2edterd275gltHAkfn4zHdwf3u5lrotc0TmrYg" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>MGRAST</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><a href="https://t.co/HzBOCD18xW">http://mgrast.org</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEh33HhxuiwT3Aoyv7wjOZPEv2HTzfsIwTKqachu17l7V0TCSmCb8hm3HRiX0BlUJj7bIno2FrNye04eJ2Xrdh_d5YWEF_YSWZyKlXu6QOGEdBajci71A_kWB9GsjeOBBlEqaIKKi-avR-tMraRSfBgH9XdQOZljFWjwDuU_cIfev_zAMCjy50omTA" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="330" data-original-width="1530" height="69" src="https://blogger.googleusercontent.com/img/a/AVvXsEh33HhxuiwT3Aoyv7wjOZPEv2HTzfsIwTKqachu17l7V0TCSmCb8hm3HRiX0BlUJj7bIno2FrNye04eJ2Xrdh_d5YWEF_YSWZyKlXu6QOGEdBajci71A_kWB9GsjeOBBlEqaIKKi-avR-tMraRSfBgH9XdQOZljFWjwDuU_cIfev_zAMCjy50omTA" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEiizIcDgETEmiiKI1_ZIS538IRsP0G4m1ZBpJgY549vBxYOy1Rb8gC6G6EeChxwdK4zUftORqpPchW3tTlN_37PZRnWQbNoDpWz8ndu45OOknr0_tnZoDcqb06Hc4QmBauTpDyWPBTeCol6t7pJOA-kBPY1rgBJPSLUlz9of6kBrxcwfP7iermPsw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="318" data-original-width="1532" height="66" src="https://blogger.googleusercontent.com/img/a/AVvXsEiizIcDgETEmiiKI1_ZIS538IRsP0G4m1ZBpJgY549vBxYOy1Rb8gC6G6EeChxwdK4zUftORqpPchW3tTlN_37PZRnWQbNoDpWz8ndu45OOknr0_tnZoDcqb06Hc4QmBauTpDyWPBTeCol6t7pJOA-kBPY1rgBJPSLUlz9of6kBrxcwfP7iermPsw" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>Metawrap</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEjTbWVkdePpDGNn2rWXSaVGejOjlqI-PGcECM9IFgQykNXcQ-Pxe-ZHM46q962qfPfLFJjG4VXdpuLIN0wvyrNg1TH_jatwktqBAulsbW6yfR_7IbQD0HTBOL_-SgwkpRxvqxFyCDUP1hZqF5rmwC-DkudEeX3wTXQ2UrhefXIiD3QDlZuHUaD6JQ" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="466" data-original-width="1476" height="101" src="https://blogger.googleusercontent.com/img/a/AVvXsEjTbWVkdePpDGNn2rWXSaVGejOjlqI-PGcECM9IFgQykNXcQ-Pxe-ZHM46q962qfPfLFJjG4VXdpuLIN0wvyrNg1TH_jatwktqBAulsbW6yfR_7IbQD0HTBOL_-SgwkpRxvqxFyCDUP1hZqF5rmwC-DkudEeX3wTXQ2UrhefXIiD3QDlZuHUaD6JQ" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>Yooseph approach</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><a href="https://t.co/sMyizpJq5f">https://pubmed.ncbi.nlm.nih.gov/27400380/</a></p><p><a href="https://t.co/XYfIj4F2na">https://pubmed.ncbi.nlm.nih.gov/27585568/</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEj88-qENjx2U4iHtYY7GQAO_GMzQmsI-hmt1AUNF7nmpCKnIT8EmFDNT9QCmuGse-afzTQ4KtSmfXDnwJWx2_cEZcdZYg2QwXz1Zg-RomdOV_M_l9nk7inK3cFFqGQCGOkjDHRMlX0EWZgWCPIZXTVbvnfnvZHJP9MTvPxNX9UyPWiBvqfeOHOx3g" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="758" data-original-width="1504" height="161" src="https://blogger.googleusercontent.com/img/a/AVvXsEj88-qENjx2U4iHtYY7GQAO_GMzQmsI-hmt1AUNF7nmpCKnIT8EmFDNT9QCmuGse-afzTQ4KtSmfXDnwJWx2_cEZcdZYg2QwXz1Zg-RomdOV_M_l9nk7inK3cFFqGQCGOkjDHRMlX0EWZgWCPIZXTVbvnfnvZHJP9MTvPxNX9UyPWiBvqfeOHOx3g" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>mi-faser</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><a href="https://t.co/RTixIYiQcx">https://bromberglab.org/project/mifaser/β¦</a></p><p></p><div class="separator" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEiTztPXeLdP2yOseOTVq8wKJBsfT5w-KH8b-wM4Ymp6vocbIPA71tBYVvZ7A9N7PNKbBojWM3xBU4K9r313h7VJbU2YRlZMnnwQ7kKlvYFfN9JKSS05HlAkQdsnX5hK7FwDzARktwFbcfyISkbhTua4-8lveG_NROsFACK9_vbtsHd1iA4klVR3rw" style="margin-left: 1em; margin-right: 1em;"><img alt="" data-original-height="1276" data-original-width="1514" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEiTztPXeLdP2yOseOTVq8wKJBsfT5w-KH8b-wM4Ymp6vocbIPA71tBYVvZ7A9N7PNKbBojWM3xBU4K9r313h7VJbU2YRlZMnnwQ7kKlvYFfN9JKSS05HlAkQdsnX5hK7FwDzARktwFbcfyISkbhTua4-8lveG_NROsFACK9_vbtsHd1iA4klVR3rw" width="286" /></a></div><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /><br /></span><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>MGX</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><a href="https://t.co/JbOF0zrYU7">https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0460-1β¦</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEiYbsvShQotEjqoA89qBJIZgWq8Xis-bOVsKgsVgT9Eb3Vdn5O6y-tJHdHg8I0GBbEBcJp5RZPInI7-j12Qm2v0Oiu3qI_nhm_nDu2UDsREb2XR6zyJSzoTYjs9mBGUARZwcbnUWAvaHVDOaEDS-XDCbFjCs60AW_gUkIJUMHoiHeBMFQ3le_bElQ" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="704" data-original-width="1530" height="147" src="https://blogger.googleusercontent.com/img/a/AVvXsEiYbsvShQotEjqoA89qBJIZgWq8Xis-bOVsKgsVgT9Eb3Vdn5O6y-tJHdHg8I0GBbEBcJp5RZPInI7-j12Qm2v0Oiu3qI_nhm_nDu2UDsREb2XR6zyJSzoTYjs9mBGUARZwcbnUWAvaHVDOaEDS-XDCbFjCs60AW_gUkIJUMHoiHeBMFQ3le_bElQ" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>MMseqs or Diamond</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEjZEABYXUpfe84ceUb9rRmNwfyLIRo2OS3nR94kCtbNPXqsz54rg4tYvyeziayGB54Okf7t9ZL5SEKcGOoMsR1icnEc0chmBqM3UsIt-2qQnjOYTzzqHXBT4xWEyOqeGR_QODR0AvVoWGHDTfeR1zYzjWLJvoVbM6bzAhuE9_kNa4vfmqqeL0HiKg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="432" data-original-width="1536" height="91" src="https://blogger.googleusercontent.com/img/a/AVvXsEjZEABYXUpfe84ceUb9rRmNwfyLIRo2OS3nR94kCtbNPXqsz54rg4tYvyeziayGB54Okf7t9ZL5SEKcGOoMsR1icnEc0chmBqM3UsIt-2qQnjOYTzzqHXBT4xWEyOqeGR_QODR0AvVoWGHDTfeR1zYzjWLJvoVbM6bzAhuE9_kNa4vfmqqeL0HiKg" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>Squeeze Meta</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><a href="https://github.com/jtamames/SqueezeMeta">https://github.com/jtamames/SqueezeMeta</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEjrwM1r3yKLXRfwW5XC71MZsdtT_3_2rPQN1_vAc-aRRSzZkNwJodHyEGcW5KsKPWy-Cy8EZGDXHPEBT7NHldyF3NcacM_ZesvQVYFZjnObQWp6eInZgNYm5Nrc1fL6_nRxfc2gJNrzWtVlVKKWvnR5AG4-1gBPnayd5d6ZDLtKHpim0MG9vxZxhQ" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1312" data-original-width="1522" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEjrwM1r3yKLXRfwW5XC71MZsdtT_3_2rPQN1_vAc-aRRSzZkNwJodHyEGcW5KsKPWy-Cy8EZGDXHPEBT7NHldyF3NcacM_ZesvQVYFZjnObQWp6eInZgNYm5Nrc1fL6_nRxfc2gJNrzWtVlVKKWvnR5AG4-1gBPnayd5d6ZDLtKHpim0MG9vxZxhQ" width="279" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><b style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><u><br /></u></b></p><p><b style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><u><span></span></u></b></p><!--more--><b style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><u><br /></u></b></div><b><u>Metageni/Superfocus </u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://github.com/metageni/SUPER-FOCUS">https://github.com/metageni/SUPER-FOCUS</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEjeDWMWJRKYybVFpgq3Tl8Gz4x5FAzJcPX5PFH5JtAxwKk3iKdCymX9yPUQ4IYlmQZIxTM-iufOOC2_OTvBej0rlSeqtQB1CfNX8MfS2vgKX1B8K7bT_VY27ZivwBXVF_m2084hE5KGqercQeglkGk_CBBPrXfKIsWqfV14St_AFVOV9vLmuhN7wA" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1242" data-original-width="1534" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEjeDWMWJRKYybVFpgq3Tl8Gz4x5FAzJcPX5PFH5JtAxwKk3iKdCymX9yPUQ4IYlmQZIxTM-iufOOC2_OTvBej0rlSeqtQB1CfNX8MfS2vgKX1B8K7bT_VY27ZivwBXVF_m2084hE5KGqercQeglkGk_CBBPrXfKIsWqfV14St_AFVOV9vLmuhN7wA" width="296" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEjDz4ZKO9pQlbMjCfJ98lcpGqQ4BosNxZ0JrpTBInDL9Zwe_AK2s7_E1ZYBaCy6NxUK2fF9tqEBbWc7LE_l34806djPsUQVrSoO1HJ3ChhREQAVLGYcPfhGYKXYK-DYS-yWkZmrNB416GOAl940bALoUG9ih_hRdgekCSrn4MyQINhLTBWRi7-ruw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="332" data-original-width="1516" height="71" src="https://blogger.googleusercontent.com/img/a/AVvXsEjDz4ZKO9pQlbMjCfJ98lcpGqQ4BosNxZ0JrpTBInDL9Zwe_AK2s7_E1ZYBaCy6NxUK2fF9tqEBbWc7LE_l34806djPsUQVrSoO1HJ3ChhREQAVLGYcPfhGYKXYK-DYS-yWkZmrNB416GOAl940bALoUG9ih_hRdgekCSrn4MyQINhLTBWRi7-ruw" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><span></span></b></span></p><!--more--><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><b><u>Plass</u></b><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></p><p><a href="https://github.com/metageni/SUPER-FOCUS">https://github.com/metageni/SUPER-FOCUS</a></p><p><br /></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEiEeEdtCXhHvkni5aYZBPC5ol8fq4K8Mk3Z_EPpPiNUhgb9j9b_CAwQG4Omw9q-5G3d5p84MW7PayHHP8g16UyQxCCI5k25eC86GZwvrDStTKKpHn0jmXjiggtt__Gp5serAf945oRJSFFcQFp2J__lJ4p0NYdPHs7sSHrOa3I5cKwl-bwFtHfcfg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1346" data-original-width="1572" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEiEeEdtCXhHvkni5aYZBPC5ol8fq4K8Mk3Z_EPpPiNUhgb9j9b_CAwQG4Omw9q-5G3d5p84MW7PayHHP8g16UyQxCCI5k25eC86GZwvrDStTKKpHn0jmXjiggtt__Gp5serAf945oRJSFFcQFp2J__lJ4p0NYdPHs7sSHrOa3I5cKwl-bwFtHfcfg" width="280" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></p><!--more--><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></div><b><u>Megan + Diamond</u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.59">https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.59</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEjHKEhNfkUzLHnqLptwWf1aN0sNHql-wBHVnhbYJoYDlRrzTuU78vGKJEvHIQ7XO8OJTZv5WDbpID6iF_xo_C0ndf-JXNoFVFhiMyzVHDjtVtjNn-gvcK2BBrB0KS6XAxTLO7NkYIiaLPoZygpV07b18lnATlSU5HAx3Os5J4PHDoEZX2jELA9_Gw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="732" data-original-width="1518" height="154" src="https://blogger.googleusercontent.com/img/a/AVvXsEjHKEhNfkUzLHnqLptwWf1aN0sNHql-wBHVnhbYJoYDlRrzTuU78vGKJEvHIQ7XO8OJTZv5WDbpID6iF_xo_C0ndf-JXNoFVFhiMyzVHDjtVtjNn-gvcK2BBrB0KS6XAxTLO7NkYIiaLPoZygpV07b18lnATlSU5HAx3Os5J4PHDoEZX2jELA9_Gw" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></p><!--more--><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></div><b><u>MetAnnotate</u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://github.com/MetAnnotate/MetAnnotate">https://github.com/MetAnnotate/MetAnnotate</a></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEgiVwwlNNxPHKTtSDCTLsuMfkXJehBlwexK5veJKElEjDIWPFvcF_VyXR_uaHlzJ6ys6CCsEaf2fIv94gOHI3ju4Ej4s1WMeNdzDOg3Av3xNPCC6vHC93YcuVyhHcrw13C6jU9FPSgRDxDV4s_ELWwduVRv3jcFzIxWXAikJPfFwtLcvZRdJyAWqw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1286" data-original-width="1538" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEgiVwwlNNxPHKTtSDCTLsuMfkXJehBlwexK5veJKElEjDIWPFvcF_VyXR_uaHlzJ6ys6CCsEaf2fIv94gOHI3ju4Ej4s1WMeNdzDOg3Av3xNPCC6vHC93YcuVyhHcrw13C6jU9FPSgRDxDV4s_ELWwduVRv3jcFzIxWXAikJPfFwtLcvZRdJyAWqw" width="287" /></a></div><br /><br /><p></p><p><br /></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><div class="separator" style="clear: both; text-align: center;"><br /></div><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></p><!--more--><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></div><b><u>Review of relevance</u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6289-6">https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6289-6</a></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEgJQKnjAig-zq0V5lJHBdIvkwG0GAiDiUbWeKh4KGdJjbk2Pn6SozNrrrB3Zs9pRUwy_N5p3PeMEeEMHYsC5zXVyffLz9OLLbqjerhpfef8wv0gbQwjjfcBsr1reJa_of-NXC-3noGP1WFguQMH2xqtbT7rhmVYzY1F0yqD0lBWiEKJSaJwYsr1Sw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1462" data-original-width="1532" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEgJQKnjAig-zq0V5lJHBdIvkwG0GAiDiUbWeKh4KGdJjbk2Pn6SozNrrrB3Zs9pRUwy_N5p3PeMEeEMHYsC5zXVyffLz9OLLbqjerhpfef8wv0gbQwjjfcBsr1reJa_of-NXC-3noGP1WFguQMH2xqtbT7rhmVYzY1F0yqD0lBWiEKJSaJwYsr1Sw" width="252" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></p><!--more--><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></div><b><u>UPROC</u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://pubmed.ncbi.nlm.nih.gov/25540185/">https://pubmed.ncbi.nlm.nih.gov/25540185/</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEi6h_8Dtub1JNrV3QDjyavst5BYt3qK28sLVBOQtH_gslfcLQ8wtVpaGtK71IFYx1kqkwUeN57fJ_Qb_w71uYSLtKSr_cHnzBfM3IljYLgBYmjU91g5GdkmSnzedC21JftX0zHbmuM1V-OgXBpwCfTnS1WxUKAfnWEv04xU1yui6tk8VGlMD7SGUg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="680" data-original-width="1514" height="145" src="https://blogger.googleusercontent.com/img/a/AVvXsEi6h_8Dtub1JNrV3QDjyavst5BYt3qK28sLVBOQtH_gslfcLQ8wtVpaGtK71IFYx1kqkwUeN57fJ_Qb_w71uYSLtKSr_cHnzBfM3IljYLgBYmjU91g5GdkmSnzedC21JftX0zHbmuM1V-OgXBpwCfTnS1WxUKAfnWEv04xU1yui6tk8VGlMD7SGUg" width="320" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></p><!--more--><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></div><b><u>Looking Glass</u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://www.nature.com/articles/s41467-022-30070-8">https://www.nature.com/articles/s41467-022-30070-8</a></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEhW1a0sz-X6np6jfcqv4s9DnzChs4jha1gX8x7Q9n50dnuCxJ2kfq01pLJxRrYeisyeZNp8BVvcGA7OTzMU7m6qYGeko0NqqTu9OsaSq-Qo-Vm32utQXCMYpoXk255ftLt95lxCHRTrWEWxgWBQArBt2AM-MVcRElPWyosFoZG1eZi1X9-hLR-hPw" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="1324" data-original-width="1526" height="240" src="https://blogger.googleusercontent.com/img/a/AVvXsEhW1a0sz-X6np6jfcqv4s9DnzChs4jha1gX8x7Q9n50dnuCxJ2kfq01pLJxRrYeisyeZNp8BVvcGA7OTzMU7m6qYGeko0NqqTu9OsaSq-Qo-Vm32utQXCMYpoXk255ftLt95lxCHRTrWEWxgWBQArBt2AM-MVcRElPWyosFoZG1eZi1X9-hLR-hPw" width="278" /></a></div><br /><br /><p></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, Segoe UI, Roboto, Helvetica, Arial, sans-serif" style="color: #0f1419;"><span style="caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><br /></span></span></p><p><span face="-apple-system, BlinkMacSystemFont, Segoe UI, Roboto, Helvetica, Arial, sans-serif" style="color: #0f1419;"><span style="caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></span></p><!--more--><span face="-apple-system, BlinkMacSystemFont, Segoe UI, Roboto, Helvetica, Arial, sans-serif" style="color: #0f1419;"><span style="caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span></div><b><u>Shortbred</u></b><div><span style="color: #0f1419;"><span style="caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEgLVXtjLWTgS5VN5CyK987cEFw1pngR_6zaUJU7TMFiIbVmItsX10rIqhcEEP0acSQJGD4zaxJrl9cQ0vI2vlZZ71YmO2ajRO9jlWOrckHBFaDEFYYxlaaKruZxcwpw_E4gqFnn8ZoBu-i_AKapndz_kyqiWvtE3azYobK6JGx9YonaNFg21M9TgA" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="330" data-original-width="1548" height="68" src="https://blogger.googleusercontent.com/img/a/AVvXsEgLVXtjLWTgS5VN5CyK987cEFw1pngR_6zaUJU7TMFiIbVmItsX10rIqhcEEP0acSQJGD4zaxJrl9cQ0vI2vlZZ71YmO2ajRO9jlWOrckHBFaDEFYYxlaaKruZxcwpw_E4gqFnn8ZoBu-i_AKapndz_kyqiWvtE3azYobK6JGx9YonaNFg21M9TgA" width="320" /></a></div><br /><br /><p></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><span></span></u></b></span></p><!--more--><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></div><b><u>Proteinfer / MGnify</u></b><div><span style="color: #0f1419;"><span style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); font-size: 15px; white-space: pre-wrap;"><b><u><br /></u></b></span></span><p></p><p><a href="https://www.ebi.ac.uk/metagenomics/pipelines/2.0">https://www.ebi.ac.uk/metagenomics/pipelines/2.0</a></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEi8RLzJiZfxhYFfL3zWPquR0E-kvedroeZN0-T0-Z7GtSJ9igNl5yXJUMr8M48FDy-BODjJ438PmnI9Coj5yEgJ8RvqSGedknbvv5PNwThYAUnvA9hgW1G77Xuvkfe25D6xB9kqsU3ammoPrglSgQy6GniCX2W0vwXRK89JlwZvgDAiMQ9Z8K3-Qg" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="472" data-original-width="1550" height="98" src="https://blogger.googleusercontent.com/img/a/AVvXsEi8RLzJiZfxhYFfL3zWPquR0E-kvedroeZN0-T0-Z7GtSJ9igNl5yXJUMr8M48FDy-BODjJ438PmnI9Coj5yEgJ8RvqSGedknbvv5PNwThYAUnvA9hgW1G77Xuvkfe25D6xB9kqsU3ammoPrglSgQy6GniCX2W0vwXRK89JlwZvgDAiMQ9Z8K3-Qg" width="320" /></a></div><br /><br /><p></p><p><br /></p><p><br /></p><p><b><u><span></span></u></b></p><!--more--><b><u><br /></u></b></div><b><u>AntiSmash</u></b><div><b><u><br /></u></b><p></p><p></p><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEhz5q2cLHZDw5WUQ6u45ZfwbfuQYERZnDRHD0LPbY5aFLdCbmvh-Iilh3Of4yod_s0ebcQtuR6f8xECJsE8SpOivT4yGA4yNDvhoKlTjFd89Ki4DjglMUc-p1WASFzqvHYOThEm0JL6Ysxi_JvLl7kj-1hSRrRdR2uBkT4T53Wdx4_CFFgQ9lk8VA" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"><img alt="" data-original-height="684" data-original-width="1492" height="147" src="https://blogger.googleusercontent.com/img/a/AVvXsEhz5q2cLHZDw5WUQ6u45ZfwbfuQYERZnDRHD0LPbY5aFLdCbmvh-Iilh3Of4yod_s0ebcQtuR6f8xECJsE8SpOivT4yGA4yNDvhoKlTjFd89Ki4DjglMUc-p1WASFzqvHYOThEm0JL6Ysxi_JvLl7kj-1hSRrRdR2uBkT4T53Wdx4_CFFgQ9lk8VA" width="320" /></a></div><br /><br /><p></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEj8PW9b6LkmwhwlUsTjlBTbE2abeXorQesJ-EnXBUFGgP2G70eSAfZ5pEhPoRa7En5QKSTeOLODLwGsLqawktCNdrCRtoM7TAuEtjtZq8TBvIF19v3VmnTzhLZNKYSxgawUWYO_Wp89Lp8N0dBsI8jSqU6kOz4gxUbSnpvYkyoHm8l9uxOFmKfGkA" style="clear: left; 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caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><br /></span></p><p><br /></p><p><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"></span></p><div class="separator" style="clear: both; text-align: center;"><span face="-apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Helvetica, Arial, sans-serif" style="background-color: rgba(0, 0, 0, 0.03); caret-color: rgb(15, 20, 25); color: #0f1419; font-size: 15px; white-space: pre-wrap;"><a href="https://blogger.googleusercontent.com/img/a/AVvXsEiW0cCzbOQjVwYiRZqbTPevcXC2m3YtI4TfLRZ_KpZ5nkVUFQKRv8QcouFj6lLDOQW-f_v7L_9jjxno2ihHncSL1SDLxreWi94vCe9oKYUMIkAFiW_J5lNDeypOn74YBj9v4DpUPpvXN1AGPLKrd3_rbkeOkUOE3ssxbVAm1WJm7K3_lijPwSQGrw" style="clear: left; 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--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-27868238366486789322023-01-19T22:22:00.001-08:002023-01-19T22:22:14.007-08:00Panoramas from the past ... In 1997, my then girlfriend (now wife) and I went camping in Death Valley. It was our fourth trip there to camp in grad. school.<br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiMvhdJuDHRbrVXVSWSeE5rwcqfa0_gsjnkRMuvo0V0Mp9Wq2b0pI4A-HV9pV2a3qodGAC2XbVEJ2WP9De3jEATpXYvCgkOl3nQJYQcsoatUbFmEGi1uy3oyqs1DA3Ny_N6bF6e8TT0m1U8reeGOj-8V1Mm7PtPE4UdRyuhndsP6AXR00c/s6048/1997_04_02-18_38_01-%3Cuntitled%3E%209711-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiMvhdJuDHRbrVXVSWSeE5rwcqfa0_gsjnkRMuvo0V0Mp9Wq2b0pI4A-HV9pV2a3qodGAC2XbVEJ2WP9De3jEATpXYvCgkOl3nQJYQcsoatUbFmEGi1uy3oyqs1DA3Ny_N6bF6e8TT0m1U8reeGOj-8V1Mm7PtPE4UdRyuhndsP6AXR00c/s320/1997_04_02-18_38_01-%3Cuntitled%3E%209711-stars.jpg" /></a><br /><br />I brought my Olympus OM1 and did something I thought could be cool with it. I took multiple overlapping pics of landscapes with the idea that I would use Photoshop or some such program to combine them together into large panoramic landscape images<br /><br />The only problem was -- I did not know how to do that <br /><br /><br />But when I got home I got the photos developed and scanned them using a scanner I had and merged them with something like Claris Draw. Here is an example - three pics from the Sand Dunes area - and the low res panorama I made - not so bad but - well - not great either<br /><br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEibg2ueYZ2v4U4m5Lvxg6nCjIgiYHUu9sJbeRGr9l6oV1dNX8CQHbuesMpEK7LR5UIWicShvNkyB94YHgjNzn26Wf6Oc8-ThX7yfJr8dP6sPOTGsS9p7gSQn8VzlTs_51C7xcSS6uKUTabZlwyWyxMr0cF4Xk7iA83gmBawxcZQmzTYYtk/s888/1997_04_01-18_00_28-DeathValley_1997_Dunes_3-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEibg2ueYZ2v4U4m5Lvxg6nCjIgiYHUu9sJbeRGr9l6oV1dNX8CQHbuesMpEK7LR5UIWicShvNkyB94YHgjNzn26Wf6Oc8-ThX7yfJr8dP6sPOTGsS9p7gSQn8VzlTs_51C7xcSS6uKUTabZlwyWyxMr0cF4Xk7iA83gmBawxcZQmzTYYtk/s320/1997_04_01-18_00_28-DeathValley_1997_Dunes_3-stars.jpg" /></a><br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgHnzOSYjtrWbLsMjFxhngWtJyFhB3tal_N1uHWS5PENBz6bYDwnVb-TEVJpThdOLlr4szFxWt_lFfsilsuUj8ixpUKo-gbI_W6jGqZiAHJkfNIe8T8bXX9WvFYtT_FfZMLh_5rf2y18pDxxhd2Ul-wG11z2dRYfF9K4RJlrczm3Bw57I4/s884/1997_04_01-18_00_26-DeathValley_1997_Dunes_2-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgHnzOSYjtrWbLsMjFxhngWtJyFhB3tal_N1uHWS5PENBz6bYDwnVb-TEVJpThdOLlr4szFxWt_lFfsilsuUj8ixpUKo-gbI_W6jGqZiAHJkfNIe8T8bXX9WvFYtT_FfZMLh_5rf2y18pDxxhd2Ul-wG11z2dRYfF9K4RJlrczm3Bw57I4/s320/1997_04_01-18_00_26-DeathValley_1997_Dunes_2-stars.jpg" /></a><br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjWyQCrLIKidrZJnQE8wHyzVszxtCYf2JYCv7wqjD81yYrE--bTkKN5JL_4FCiTzjVb_sYpR5J1scB2rfHX_uVtRVzQdG0ISevALLyZ3T4fX8ooU4MVkBVv2HYys7Jir3wL7idt0UGQdcg5mheNkmxgMIfdGKffQjS0qP5AJqBH9E2KTzM/s877/1997_04_01-18_00_23-DeathValley_1997_Dunes_1-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjWyQCrLIKidrZJnQE8wHyzVszxtCYf2JYCv7wqjD81yYrE--bTkKN5JL_4FCiTzjVb_sYpR5J1scB2rfHX_uVtRVzQdG0ISevALLyZ3T4fX8ooU4MVkBVv2HYys7Jir3wL7idt0UGQdcg5mheNkmxgMIfdGKffQjS0qP5AJqBH9E2KTzM/s320/1997_04_01-18_00_23-DeathValley_1997_Dunes_1-stars.jpg" /></a><br /><br /><br /><br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhrkiUFQlLEBqIkcDe1QiMauP27xfrhlLaXrXQdtY3a2Tg9xkv3jV6UeWEntN00patO1jIYc31VHX7eK7J-IsM_L6p6XY0mYLHMhgppd6QBCqGuNiYuFOTK43TgVCa5pPHm-eel5oO_8xgIA-LDTyc20Naq8dMFBdgnn8BGJ-yxYORD9k0/s2219/1997_04_01-18_00_28-DeathValley_1997_Dunes_3-Pano-5stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhrkiUFQlLEBqIkcDe1QiMauP27xfrhlLaXrXQdtY3a2Tg9xkv3jV6UeWEntN00patO1jIYc31VHX7eK7J-IsM_L6p6XY0mYLHMhgppd6QBCqGuNiYuFOTK43TgVCa5pPHm-eel5oO_8xgIA-LDTyc20Naq8dMFBdgnn8BGJ-yxYORD9k0/s320/1997_04_01-18_00_28-DeathValley_1997_Dunes_3-Pano-5stars.jpg" /></a><br /><br />I did the same thing in other places around Death Valley. Snapping pics and then when I got home tried to make the panoramas. This one is of Titus Canyon. Not so great but OK it reminded me of the place<br /><br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhVBYPBu0AZnVaCk0KhHBAudRdVjbofonk_pOUkMDmcvZiwm1SdoXCG_x13cTsTZ088ribuGy7ioLh0GjeGy8r9jNiRWMgjdFD3zxSrqGl-CAU8s4Yo-GWDfsc9S5MxMNDf6UVU_fihBe-sQaPggFL87pmRe8-dkc4Us8rxb3o_Qjv3TBY/s736/1997_04_01-18_02_16-DeathValley_1997_Titus_Combo-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhVBYPBu0AZnVaCk0KhHBAudRdVjbofonk_pOUkMDmcvZiwm1SdoXCG_x13cTsTZ088ribuGy7ioLh0GjeGy8r9jNiRWMgjdFD3zxSrqGl-CAU8s4Yo-GWDfsc9S5MxMNDf6UVU_fihBe-sQaPggFL87pmRe8-dkc4Us8rxb3o_Qjv3TBY/s320/1997_04_01-18_02_16-DeathValley_1997_Titus_Combo-stars.jpg" /></a><br /><br /><br />Well, fortunately, I keep everything. And I got pics and slides and negatives scanned with better scanners a while back. And recently I was looking through pics and re-encountered these attempted panoramas. So with Adobe Lightroom I tried again<br /><br />And, well, the results were pretty fucking nice. Here is a new stitched panorama of the dunes - probably going to get the printed and framed<br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEikEiXRUHfhQnaWtaz8Q0IFKg-LBi28N-l-cblBPswWk-QRljlgmy9mzpatsW5PeNMDjBjHgKvUH9eM6SP8mspknNnjWlQL2x4Ak03sczUfD0pmOAnZB9orIlvy1stNYE1x9uuxuNHQmSTu58vhZGsHCi5JU0oDNra6qmSyimCrcw5msyQ/s15068/2011_03_21-19_53_54-00920_n_11abpuh6ux0836-Pano-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEikEiXRUHfhQnaWtaz8Q0IFKg-LBi28N-l-cblBPswWk-QRljlgmy9mzpatsW5PeNMDjBjHgKvUH9eM6SP8mspknNnjWlQL2x4Ak03sczUfD0pmOAnZB9orIlvy1stNYE1x9uuxuNHQmSTu58vhZGsHCi5JU0oDNra6qmSyimCrcw5msyQ/s320/2011_03_21-19_53_54-00920_n_11abpuh6ux0836-Pano-stars.jpg" /></a><br /><br />And here is a remake of the Titus Canyon<br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEioqR9s6QoR9w97ufjrv88Z-c06jFUdkdb-5MOo9qBQAOFuAZgrxRk0H2wO1xlPBcZlO0GCQowrICyuElf_DoA20nxsF6H6SoyUFFKqlzioqs-uQ1OqXaGW-PMGj7gk48R3VjCYqGYWeaCrIVrg9sLMqP0VYfVE_qwlZ7jjX5BPzp8moPI/s15722/2011_04_12-13_20_29-00456_n_11abpuh6ux0369-Pano-5stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEioqR9s6QoR9w97ufjrv88Z-c06jFUdkdb-5MOo9qBQAOFuAZgrxRk0H2wO1xlPBcZlO0GCQowrICyuElf_DoA20nxsF6H6SoyUFFKqlzioqs-uQ1OqXaGW-PMGj7gk48R3VjCYqGYWeaCrIVrg9sLMqP0VYfVE_qwlZ7jjX5BPzp8moPI/s320/2011_04_12-13_20_29-00456_n_11abpuh6ux0369-Pano-5stars.jpg" /></a><br /><br />I am so glad I kept my old pics in relatively good shape and got them scanned. And even though it did not work out so well at the time, I am also glad I did these "click and pan" collections now that I have better tools for merging them. This one is my favorite so far<br /><br /><br /><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgzxV4ijIrL8n977npBOI9VfSr5gDwTn0i2XBYcEMk4Q6QnfKwxUS1PCFQVw4PVhSIhdk0AbhrG9fyyvPRf9EP99q-gXmPA1y4YfSExTzobTv_s4EVQvrnHnIyhR742-SM8EfzBhMfM6ZniaJ9Kvy9PNc1drKYEmPj0Z3NASsB124YrQ5A/s18973/2011_03_21-19_53_56-00927_n_11abpuh6ux0843-Pano-stars.jpg"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgzxV4ijIrL8n977npBOI9VfSr5gDwTn0i2XBYcEMk4Q6QnfKwxUS1PCFQVw4PVhSIhdk0AbhrG9fyyvPRf9EP99q-gXmPA1y4YfSExTzobTv_s4EVQvrnHnIyhR742-SM8EfzBhMfM6ZniaJ9Kvy9PNc1drKYEmPj0Z3NASsB124YrQ5A/s320/2011_03_21-19_53_56-00927_n_11abpuh6ux0843-Pano-stars.jpg" /></a><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-68867467663009010242022-12-19T07:14:00.001-08:002022-12-19T07:14:10.228-08:00Well, this is about as scammy / spammy as a journal can get ... putting me on an editorial board I did not agree to be on ... <p> <span style="font-size: medium;">So I got an email this AM from "<span style="color: #1f1f1f; font-family: "Google Sans", Roboto, RobotoDraft, Helvetica, Arial, sans-serif; font-weight: bold; white-space: nowrap;">Microorganisms Editorial Office"</span></span></p><p><span style="background-color: white; caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;"><span style="font-size: medium;"></span></span></p><blockquote><p><span style="font-size: medium;"><span style="background-color: white; caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;">Dear Prof. Dr. Eisen,</span><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /><span style="background-color: white; caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;">We are pleased to inform you that your information has been announced on the </span><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /><span style="background-color: white; caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;">webpage of our journal's board.</span><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /><span style="background-color: white; caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;">Please check that all of your information is correct here:</span><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /><a data-saferedirecturl="https://www.google.com/url?q=https://www.mdpi.com/journal/microorganisms&source=gmail&ust=1671548881664000&usg=AOvVaw04NPYhOWDUcZx7uMlnXLiP" href="https://www.mdpi.com/journal/microorganisms" rel="noreferrer" style="color: #1155cc; font-family: Arial, Helvetica, sans-serif;" target="_blank">https://www.mdpi.com/journal/m<wbr></wbr>icroorganisms</a><br style="caret-color: rgb(34, 34, 34); color: #222222; font-family: Arial, Helvetica, sans-serif;" /></span></p><p></p></blockquote><p><span style="font-size: large;">Cool. Cool. Except I never agreed to be on their editorial board. And yet there I am on their web site.</span></p><p><a href="https://www.mdpi.com/journal/microorganisms/editors?page_no=3"><span style="font-size: medium;">https://www.mdpi.com/journal/microorganisms/editors?page_no=3</span></a></p><table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto;"><tbody><tr><td style="text-align: center;"><span style="font-size: medium;"><img alt="Prof. Dr. Jonathan Eisen Website Editorial Board Member Professor, Department of Evolution and Ecology, University of California, Davis (UC Davis), Davis, CA, USA Interests: comparative genomics; next generation sequencing; molecular evolution; bioinformatics and computational biology; genome sequencing; genome annotation; metagenomics; genomics; molecular phylogenetics; science communication" src="blob:https://draft.blogger.com/e8c88619-9893-45f4-a180-f84d169667ea" style="margin-left: auto; margin-right: auto;" /></span></td></tr><tr><td class="tr-caption" style="text-align: center;"></td></tr></tbody></table><p><span style="font-size: medium;">No MDPI Microoorganisms. This is not OK. </span></p><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-11591980362722916732022-09-11T16:24:00.001-07:002022-09-11T16:24:33.596-07:00Lake Arrowhead Microbial Genomics Meeting History Making a page here with information on the history of the Lake Arrowhead Microbial Genomes meeting. Β Please post in comments any additional links to other information.
<ul>
<li>1998
<ul>
<li><a href="http://microbe.net/wp-content/uploads/2016/09/1998_Arrowhead.pdf">1998_arrowhead</a>Β booklet</li>
<li><a href="http://phylogenomics.files.wordpress.com/2012/08/1998_lakearrowhead1998notes.pdf">1998_LakeArrowhead</a>Β notes</li>
<li><a href="http://phylogenomics.files.wordpress.com/2012/08/1998_arrowheadadobeocr.pdf">1998_Arrowhead</a>Β booklet version 2</li>
</ul>
</li>
<li>2000
<ul>
<li><a href="http://microbe.net/wp-content/uploads/2016/09/2000_Arrowhead.pdf">2000_arrowhead</a>Β booklet</li>
<li>Jonathan Eisen talk from 2000Β <a href="http://www.slideshare.net/phylogenomics/jonathan-eisen-talk-on-phylogenomics-of-dna-repair-at-lake-arrowhead-small-genomes-meeting-2000">Jonathan Eisen talk on "Phylogenomics of DNA repair" at Lake Arrowhead Small Genomes Meeting 2000</a></li>
</ul>
</li>
<li>2002
<ul>
<li>Jonathan Eisen talk from 2002Β <a href="http://www.slideshare.net/phylogenomics/jonathan-eisen-talk-on-phylogenomics-of-microbes-at-lake-arrowhead-small-genomes-meeting-2002">Jonathan Eisen talk on "Phylogenomics of Microbes" at Lake Arrowhead Small Genomes Meeting 2002</a></li>
</ul>
</li>
<li>2004
<ul>
<li><a href="http://microbe.net/wp-content/uploads/2016/09/LakeArrowhead2004.pdf">lakearrowhead2004</a>Β booklet</li>
<li>Jonathan Eisen talk from 2004Β <a href="http://www.slideshare.net/phylogenomics/jonathan-eisen-talk-on-phylogenomics-of-microbes-at-lake-arrowhead-small-genomes-meeting-2004">Jonathan Eisen talk on "Phylogenomics of Microbes" at Lake Arrowhead Small Genomes Meeting 2004</a></li>
</ul>
</li>
<li>2006
<ul>
<li><a href="http://microbe.net/wp-content/uploads/2016/09/2006_Arrowhead.pdf">2006_arrowhead</a>Β booklet</li>
<li><a href="http://phylogenomics.blogspot.com/2006/09/genomics-education-highlighted-at-14th.html">Genomics Education highlighted at 14th Annual International Meeting on Microbial Genomics</a></li>
<li>Jonathan Eisen talk from 2006Β <a href="http://www.slideshare.net/phylogenomics/jonathan-eisen-talk-on-enodsymbiont-genomics-at-lake-arrowhead-small-genomes-meeting-2006">Jonathan Eisen talk on "Enodsymbiont Genomics" at Lake Arrowhead Small Genomes Meeting 2006</a></li>
</ul>
</li>
<li>2008
<ul>
<li><a href="http://microbe.net/wp-content/uploads/2016/09/2008_Arrowhead.pdf">2008_arrowhead</a></li>
<li><a href="http://phylogenomics.blogspot.com/2008/09/its-miller-time-lake-arrowhead.html">It's Miller Time - Lake Arrowhead Microbial Genomes Conference -- about to begin</a></li>
<li>Morgan LangilleΒ <a href="http://betascience.blogspot.com/2008/09/review-of-arrowhead-conference.html">Review of Arrowhead Conference</a></li>
<li>September 16, 2008:Β <a href="http://phylogenomics.blogspot.com/2008/09/lake-arrowhead-notes_15.html">Lake arrowhead notes - UPDATED</a></li>
<li>Jonathan Eisen talk from 2008Β <a href="http://www.slideshare.net/phylogenomics/jonathan-eisen-talk-on-genomic-encyclopedia-at-lake-arrowhead-small-genomes-meeting-2008">Jonathan Eisen talk on "Genomic Encyclopedia" at Lake Arrowhead Small Genomes Meeting 2008</a></li>
</ul>
</li>
<li>2010
<ul>
<li><a href="http://phylogenomics.blogspot.com/2010/10/story-behind-meeting-lake-arrowhead.html">The Story behind the Meeting: Lake Arrowhead Microbial Genomes 2010Β </a></li>
<li>Jonathan Eisen talk from 2010Β <a href="http://www.slideshare.net/phylogenomics/jonathan-eisen-talk-on-the-importance-of-history-at-lake-arrowhead-small-genomes-meeting-2010">Jonathan Eisen talk on "The Importance of History" at Lake Arrowhead Small Genomes Meeting 2010</a></li>
</ul>
</li>
<li>2012
<ul>
<li><a href="http://microbe.net/wp-content/uploads/2016/09/2012-Arrowhead-booklet.pdf">2012-arrowhead-booklet</a></li>
<li><a href="http://microbe.net/2012/12/23/lessons-from-2012-lake-arrowhead-microbial-genomes/">Srijak Bhatnagar:Β Lessons from 2012: Lake Arrowhead Microbial Genomes</a></li>
<li><a href="http://phylogenomics.blogspot.com/2012/09/storify-for-lake-arrowhead-microbial.html">Storify for Lake Arrowhead Microbial Genomes #LAMG12 Meeting</a></li>
<li><a href="http://phylogenomics.blogspot.com/2012/09/lake-arrowhead-microbial-genomes.html">Lake Arrowhead Microbial Genomes Meeting 2012 Speaker Gender Ratio #LAMG12</a></li>
<li><a href="http://phylogenomics.blogspot.com/2012/07/lake-arrowhead-microbial-genomes-2012.html">Lake Arrowhead Microbial Genomes 2012 #Genomes #Microbes #Mountains #Lake #Fun #Wine #MustGo</a></li>
<li>Jonathan Eisen talk from 2012Β <a href="https://www.slideshare.net/phylogenomics/jonathan-eisen-phylogenomics-talk-for-lamg12">Jonathan Eisen @phylogenomics talk for #LAMG12</a></li>
<li><a href="https://microbe.net/2012/10/01/recorded-talks-from-lake-arrowhead-lamg12-james-meadow-jason-stajich-susana-remold/" rel="bookmark">Recorded talks from Lake Arrowhead (#LAMG12); James Meadow, Jason Stajich, Susana Remold</a></li>
<li><a href="https://microbe.net/2012/09/19/lake-arrowhead-microbial-genomics-meeting-2012-microbiology-of-the-built-environment-session/" rel="bookmark">Lake Arrowhead Microbial Genomics Meeting 2012: Microbiology of the Built Environment Session</a></li>
<li>Wakelet: <a href="https://wke.lt/w/s/3XFHf">https://wke.lt/w/s/3XFHf</a></li>
<li>microBEnet wakelet: <a href="https://wke.lt/w/s/0Pvtc">https://wke.lt/w/s/0Pvtc</a></li>
</ul>
</li>
<li>2014
<ul>
<li><a href="http://phylogenomics.blogspot.com/2014/03/save-dates-preliminary-program-for-lake.html">Save the dates / preliminary program for Lake Arrowhead Microbial Genomes Meeting</a></li>
<li><a href="https://phylogenomics.blogspot.com/2014/09/everything-you-wanted-to-know-about.html">Everything You Wanted to Know about the Lake Arrowhead Microbial Genomes meeting #LAMG14</a></li>
<li>[slideshare id=39085737&doc=u00svzw6sd6cmzosdqpq-signature-630f2659b9ee1c26c2aa680828306e8586a48ecd7c2440ecf20af82024ab7966-poli-140915022043-phpapp01]</li>
<li><a href="https://storify.com/phylogenomics/lamg14-try-1">Storify Days 1-3</a></li>
<li>https://youtu.be/TMm1Peu745I</li>
<li><a href="http://microbe.net/2014/09/27/lake-arrowhead-microbial-genomics-2014-lamg14-f1000-site-w-posters-and-talks/">2014 meeting wrap up on microBEnet</a></li>
<li>Jonathan Eisen talk from 2014.Β http://www.slideshare.net/phylogenomics/jonathan-eisen-history-of-lake-arrowhead-microbial-genomes</li>
<li><a href="https://microbe.net/2014/09/27/lake-arrowhead-microbial-genomics-2014-lamg14-f1000-site-w-posters-and-talks/" rel="bookmark">Lake Arrowhead Microbial Genomics 2014 (#LAMG14) F1000 Site w/ Posters and Talks</a></li>
<li><a href="https://microbe.net/2014/09/18/report-and-storify-from-lake-arrowhead-day-3/" rel="bookmark">Report and Storify from Lake Arrowhead: Day 3</a></li>
<li><a href="https://microbe.net/2014/09/17/report-and-storify-from-lake-arrowhead-day-2/" rel="bookmark">Report and Storify from Lake Arrowhead: Day 2</a></li>
<li><a href="https://microbe.net/2014/09/16/report-and-storify-from-lake-arrowhead-microbial-genomics-day-1/" rel="bookmark">Report and Storify from Lake Arrowhead Microbial Genomics: Day 1</a></li>
<li>Wakelet Day 1-3: <a href="https://wke.lt/w/s/EiuMu">https://wke.lt/w/s/EiuMu</a></li>
<li>Wavelet Day 3-4: <a href="https://wke.lt/w/s/oo5xE">https://wke.lt/w/s/oo5xE</a></li>
<li>Wakelet Day 4: <a href="https://wke.lt/w/s/GyX32-">https://wke.lt/w/s/GyX32-</a></li>
<li>Wakelet Day 5: <a href="https://wke.lt/w/s/85aHm">https://wke.lt/w/s/85aHm</a></li>
</ul>
</li>
<li>2016
<ul>
<li><a href="http://microbe.net/2016/03/06/21st-annual-international-meeting-on-microbial-genomes-at-lake-arrowhead-918-22/">21st Annual International Meeting on Microbial Genomes at Lake Arrowhead 9/18-22</a></li>
<li><a href="https://microbe.net/2016/09/23/storifies-of-tweets-from-lamg16-lake-arrowhead-microbial-genomes/" rel="bookmark">Reports from #LAMG16 Lake Arrowhead Microbial Genomes</a></li>
<li><a href="https://microbe.net/2016/09/22/lake-arrowhead-microbial-genomics-lamg16-day-4-and-random-thoughts/" rel="bookmark">Lake Arrowhead Microbial Genomics #LAMG16: Day 4 and Random Thoughts</a></li>
<li><a href="https://microbe.net/2016/09/22/microbiology-of-the-built-environment-session-at-lake-arrowhead-microbial-genomes-meeting/" rel="bookmark">microbiology of the Built Environment session at Lake Arrowhead Microbial Genomes meeting</a></li>
<li>microBEnet session wavelet: <a href="https://wke.lt/w/s/mYYhh6">https://wke.lt/w/s/mYYhh6</a></li>
<li><a href="https://microbe.net/2016/09/21/lake-arrowhead-microbial-genomes-lamg16-day-3/" rel="bookmark">Lake Arrowhead Microbial Genomes #LAMG16: Day 3</a></li>
<li><a href="https://microbe.net/2016/09/20/lake-arrowhead-microbial-genomics-lamg16-report-day-2/" rel="bookmark">Lake Arrowhead Microbial Genomics #LAMG16 Report: Day 2</a></li>
<li><a href="https://microbe.net/2016/09/19/lake-arrowhead-microbial-genomics-lamg16-report-day-1/" rel="bookmark">Lake Arrowhead Microbial Genomics #LAMG16 Report: Day 1</a></li>
<li>Wakelet Day 1-2 <a href="https://wke.lt/w/s/t5u4M">https://wke.lt/w/s/t5u4M</a></li>
<li>Wakelet Day3: <a href="https://wke.lt/w/s/BvXae">https://wke.lt/w/s/BvXae</a></li>
<li>Wakelet Day 4-5: <a href="https://wke.lt/w/s/If2XW">https://wke.lt/w/s/If2XW</a></li>
<li>Eisen Tweets wavelet: <a href="https://wke.lt/w/s/WQ4Ud">https://wke.lt/w/s/WQ4Ud</a></li>
</ul>
</li>
<li>2018
<ul>
<li style="list-style-type: none;">
<ul>
<li>
<p class="entry-title"><a href="https://microbe.net/2018/09/17/lake-arrowhead-microbial-genomics-meeting-lamg2108-day-1/" rel="bookmark">Lake Arrowhead Microbial Genomics Meeting (#LAMG2018) Day 1</a></p>
</li>
<li>
<p class="entry-title"><a href="https://microbe.net/2018/09/18/lake-arrowhead-microbial-genomics-meeting-lamg2018-day-2/" rel="bookmark">Lake Arrowhead Microbial Genomics Meeting (#LAMG2018) Day 2</a></p>
</li>
<li>
<p class="entry-title"><a href="https://microbe.net/2018/09/19/lake-arrowhead-microbial-genomics-meeting-lamg2018-day-3/" rel="bookmark">Lake Arrowhead Microbial Genomics Meeting (#LAMG2018) Day 3</a></p>
</li>
<li>
<p class="entry-title"><a href="https://microbe.net/2018/09/21/lake-arrowhead-microbial-genomics-meeting-lamg2018-day-4-5/" rel="bookmark">Lake Arrowhead Microbial Genomics Meeting (#LAMG2018) Day 4/5</a></p>
</li>
<li>Another wavelet attempt: <a href="https://wke.lt/w/s/f6Oug_">https://wke.lt/w/s/f6Oug_</a></li>
</ul>
</li>
</ul>
Wakelet about 2018 meeting try 1
<iframe class="wakeletEmbed" style="border: none;" src="https://embed.wakelet.com/wakes/806c4a61-025c-4b4e-9274-7d33382111e2/list" width="100%" height="760px"></iframe><!-- Please only call https://embed-assets.wakelet.com/wakelet-embed.js once per page --><script src="https://embed-assets.wakelet.com/wakelet-embed.js" charset="UTF-8"></script>
Wakelet about 2018 meeting try 2
<iframe class="wakeletEmbed" style="border: none;" src="https://embed.wakelet.com/wakes/806c4a61-025c-4b4e-9274-7d33382111e2/list" width="100%" height="760px"></iframe><!-- Please only call https://embed-assets.wakelet.com/wakelet-embed.js once per page --><script src="https://embed-assets.wakelet.com/wakelet-embed.js" charset="UTF-8"></script></li>
</ul><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-20739617988360768222022-08-19T21:28:00.002-07:002022-08-19T21:28:36.995-07:00Wanted - comments on the current @ucdavis COVID plans <p> So - I have been publicly and privately critical of some of the recent @ucdavis practices regarding COVID. If you want to know more about my areas of concern see for example this Twitter thread which I posted today: </p>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Following up on this I thought I would share the slides I used for my presentation to <a href="https://twitter.com/Chancellor_May?ref_src=twsrc%5Etfw">@Chancellor_May</a> and his leadership group a few weeks ago with my thoughts on the <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> current <a href="https://twitter.com/hashtag/COVID?src=hash&ref_src=twsrc%5Etfw">#COVID</a> response. <a href="https://t.co/yKRYU1Gugd">https://t.co/yKRYU1Gugd</a><br /><br />1/n <a href="https://t.co/vD0Cpb795f">https://t.co/vD0Cpb795f</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1560719591772344321?ref_src=twsrc%5Etfw">August 19, 2022</a></blockquote><p>After I posted that, The Chancellor of UC Davis Gary May posted an article with some details of current UC Davis COVID plans. See <a href="https://leadership.ucdavis.edu/news/checking-in-with-chancellor-may-planning-ahead">https://leadership.ucdavis.edu/news/checking-in-with-chancellor-may-planning-ahead</a> </p><p>What he wrote is below - but rather than comment myself right now, I am wondering - what do people out there (especially those at UC Davis) think of all of this?</p><h2 style="box-sizing: inherit; color: #13639e; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; font-size: 2.0995rem; line-height: 1.2; margin: 0.75em 0px 0.25em; padding: 0px;"><span style="box-sizing: inherit;"></span></h2><blockquote><h2 style="box-sizing: inherit; color: #13639e; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; line-height: 1.2; margin: 0.75em 0px 0.25em; padding: 0px;"><span style="box-sizing: inherit;"><span style="font-size: small;">Coronavirus</span></span></h2><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">Davis campus students are required to be compliant with the </span><a href="https://ucnet.universityofcalifornia.edu/news/2021/07/ucs-covid-19-vaccine-policy.html" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">UC Vaccine Policy</span></a><span style="box-sizing: inherit;"> by Sept. 21 either by </span><a href="https://campusready.ucdavis.edu/covid-vaccination" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">being up to date on vaccines and boosters</span></a><span style="box-sizing: inherit;"> or </span><a href="https://campusready.ucdavis.edu/covid-vaccination/exceptions" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">submitting a religious or medical exception request</span></a><span style="box-sizing: inherit;">. Students who are not in compliance by Sept. 21 will receive a </span><a href="https://registrar.ucdavis.edu/registration/register-for-classes/holds" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">registration hold</span></a><span style="box-sizing: inherit;"> on their accounts for fall quarter. Please visit the </span><a href="https://campusready.ucdavis.edu/students-and-families" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Information for Students and Families page</span></a><span style="box-sizing: inherit;"> on the Campus Ready website for additional details about the vaccine policy compliance process. </span><a href="https://campusready.ucdavis.edu/covid-vaccination" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">The vaccine policy also applies to employees.</span></a></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">Itβs clear that COVID-19 will be with us for some time. UC Davis continues to monitor for the virus through weekly wastewater testing, which helps inform our decision making. We have reviewed the scientific literature and heard from many people, and, at this point, we are not likely to increase the frequency of wastewater testing given that Davis is not a large urban center. Also please note: We have access to daily test results from Stanfordβs </span><span style="box-sizing: inherit;">Sewer Coronavirus Alert Network (SCAN).</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">We encourage our students, faculty and staff to get tested regularly for COVID-19. The Davis campus testing kiosk β offering free, asymptomatic testing (saliva-based) β remains in operation, although in a new location: </span><a href="http://campusmap.ucdavis.edu/?b=87" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Human Resources Administration Building (1050 Blue Ridge Road)</span></a><span style="box-sizing: inherit;">, across La Rue Road from the ARC. The kiosk is open from 8:30 a.m. to 4:30 p.m. Sunday through Thursday (closed Fridays and Saturdays). Testing is by appointment only through the </span><a href="http://hem.ucdavis.edu/" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Health-e-Messaging portal</span></a><span style="box-sizing: inherit;">. Please note: Testing appointments are limited from Sept. 13 to 15, due to move-in.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;">At-home antigen tests are available for free as follows:</span></p><ul style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; overflow: hidden;"><li style="box-sizing: inherit;"><strong style="box-sizing: inherit;">By mail</strong> <span style="box-sizing: inherit;"><a href="https://www.covid.gov/tests" style="box-sizing: inherit; color: #13639e; outline: 0px;">from the federal government</a>.</span></li><li style="box-sizing: inherit;"><strong style="box-sizing: inherit;">From no-charge vending machines</strong><span style="box-sizing: inherit;"> around Yolo County. The machines are accessible 24 hours a day at the Mary L. Stephens Davis Branch Library, 315 E. 14th St.; West Sacramento City Hall, 1110 W. Capitol Blvd.; Winters City Hall, 318 1st St.; and Esparto Regional Library, 17065 Yolo Ave. (with one more to be installed in Woodland).</span></li><li style="box-sizing: inherit;"><a href="https://yolocountylibrary.org/locations/" style="box-sizing: inherit; color: #13639e; outline: 0px;"><strong style="box-sizing: inherit;">From Yolo County libraries</strong></a><span style="box-sizing: inherit;"> during open hours.</span></li></ul><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">I would also like to recognize the effects of long COVID and the impact it continues to have on people. We are learning more about it every day, in UC Davis Healthβs </span><a href="https://health.ucdavis.edu/news/headlines/lessons-from-the-long-covid-clinic/2022/04" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Post-COVID-19 Clinic</span></a><span style="box-sizing: inherit;">, which opened in November 2020; and in our research and clinical studies, including </span><a href="https://health.ucdavis.edu/news/headlines/international-study-identifies-risks-for-long-covid-in-children/2022/07" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">one assessing the risks for children</span></a><span style="box-sizing: inherit;">.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">Students affected by long COVID should work with the </span><a href="https://sdc.ucdavis.edu/" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Student Disability Center</span></a><span style="box-sizing: inherit;"> for resources and support. Employees should work with </span><a href="https://hr.ucdavis.edu/departments/elr/dms" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Disability Management Services</span></a><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">. </span></span><span style="box-sizing: inherit;">These units are busy, so please reach out to begin the interactive process as soon as you can.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><h2 style="box-sizing: inherit; color: #13639e; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; line-height: 1.2; margin: 0.75em 0px 0.25em; padding: 0px;"><span style="box-sizing: inherit;"><span style="font-size: small;">Masking and air filters</span></span></h2><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;">I recognize that there is still some anxiety about masking. While the Davis campus does not have a mask mandate in place, we strongly recommend that people wear masks indoors to reduce risk.</span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><a href="https://campusready.ucdavis.edu/face-coverings-masks#distribution" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Free masks are coming soon.</span></a><span style="box-sizing: inherit;"> The university plans to distribute one N95 mask to every student and employee this fall quarter, with this one-time distribution to take place in September. For more information about the distribution, students should contact their major departments, and employees should contact their departments or units. </span><a href="https://campusready.ucdavis.edu/face-coverings-masks#department-directions" style="box-sizing: inherit; color: #13639e; outline: 0px;"><em style="box-sizing: inherit;"><span style="box-sizing: inherit;">See βDirections for departmentsβ on how to acquire mask supplies.</span></em></a></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">Remember that a proper mask fit is especially important. </span><a href="https://uctraining.wufoo.com/forms/m1yhu0yb1bm4com/" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">A 10-minute video</span></a><span style="box-sizing: inherit;"> is available for students on how to properly use N95 masks, also called respirators. They are rated to filter out 95% of particles.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">Employees are required to complete a </span><a href="https://campusready.ucdavis.edu/face-coverings-masks" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">10-minute video training</span></a><span style="box-sizing: inherit;"> about the proper use of N95 masks.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">Yolo County also offers </span><a href="https://www.youtube.com/watch?v=Ekp_Yy6iw1Q" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">video guidance on masking</span></a><span style="box-sizing: inherit;">. Further information can be found at </span><a href="https://campusready.ucdavis.edu/face-coverings-masks" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">Campus Ready</span></a><span style="box-sizing: inherit;"> and through the </span><a href="https://www.cdph.ca.gov/Programs/CID/DCDC/Pages/COVID-19/Get-the-Most-out-of-Masking.aspx" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">California Department of Public Health</span></a><span style="box-sizing: inherit;">.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p style="box-sizing: inherit; font-family: proxima-nova, system-ui, -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, Ubuntu, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; margin-bottom: 1rem; margin-top: 0px;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;"><span style="box-sizing: inherit;">If youβre concerned about air filtration at home, a Corsi-Rosenthal Box is a cost-effective device that can be built with just a few components. The box was co-invented by Richard Corsi, dean of the College of Engineering, and has received acclaim nationwide. Visit this link to learn how to </span><a href="https://engineering.ucdavis.edu/news/science-action-how-build-corsi-rosenthal-box" style="box-sizing: inherit; color: #13639e; outline: 0px;"><span style="box-sizing: inherit;">build your own Corsi-Rosenthal Box</span></a><span style="box-sizing: inherit;">.</span></span></span></span></span></span></span></span></span></span></span></span></span></p><p></p></blockquote><p><br class="Apple-interchange-newline" /></p><p><br /></p><p><br /></p> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com1tag:blogger.com,1999:blog-10781944.post-60304124827628115582022-06-05T17:04:00.006-07:002022-06-05T18:03:15.290-07:00Best pics from Trip to Monterey - Day 1 - May 25, 2022<p> </p>
Went on a brief trip to Monterey, CA last week. Took lots of pics. Here are some of the better ones. Also see <a href="https://www.inaturalist.org/calendar/phylogenomics/2022/5/25" target="_blank">postings with identifications at iNaturalist</a>.<div><br /></div><div>
<iframe frameborder="no" height="400" scrolling="no" src="https://jonathaneisen.smugmug.com/frame/slideshow?key=k4tvmv&speed=3&transition=fade&autoStart=1&captions=0&navigation=1&playButton=1&randomize=0&transitionSpeed=2" width="600"></iframe></div><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-26398430954385270872022-05-16T09:37:00.000-07:002022-05-16T09:37:06.588-07:00Videos about using the UCSC Genome Browser for analysis of SarsCOV2<p> These look pretty useful and thought I would post here. Text is from the UCSC Youtube channel</p><p><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">This 5-part video series is for virologists and public health researchers interested in leveraging the UCSC Genome Browser and web interface to UShER (Ultrafast Sample placement on Existing tRees). These tools are a 'one-stop shop' to understand SARS-CoV-2 through genome annotations as well as track variants by placing your samples in a phylogenetic tree with millions of other SARS-CoV-2 sequences.
Use the SARS-CoV-2 Genome Browser:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqa1BVR3BBOHRhS2E4ZlJJSUZscldjRnZ2dzVVd3xBQ3Jtc0tsME9CYW5IRVVDWXdvVnZKM19NNGlVN0s5N0lIYUFXLUV4MEtfOGpINS1LS3EyTHl2Q29xT0tqdEdiajVTWE1mMFdwZGRGMmxaUDJSNU9MNEhRcFlacWlOLTNwQTJ5QUtqWk83MXR2X3pFR2tQYmxpMA&q=http%3A%2F%2Fbit.ly%2Fsarscov2browser&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">http://bit.ly/sarscov2browser</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
Visit our SARS-CoV-2 Genome Browser and UShER quick start page with videos, scripts and more:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbHotSXlUZUMzUk9qUDZCcnl1bktTbnJjN0o2QXxBQ3Jtc0tuMmVEWUtWdFRieGl3QmI3QmFFLXNHdHpfYXZpelA4anZwcWJlX2thVHlyV19KX1djX0tIV2t6NWRRcklmYXMxRlFmZjk4b3FDdUF1RVVQNkJHcHZnR2Q4LWtKdUlUS0xtS3diZVBXb0lDNGJDbUo1WQ&q=http%3A%2F%2Fbit.ly%2Fucsccovidbrowser&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">http://bit.ly/ucsccovidbrowser</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
COVID-19 Research at UCSC:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqa3EtdzRSWGRhS3JETkZweDVJdVlLSzBRd3Rqd3xBQ3Jtc0ttenhBVVpBNmc4bGxqc2htdV9XSXdrYU51cld1V3hyMDN0SFJLamRpWU83TTNWdlBCdkNYSTdqakl0Y1hramtBQVhucWNVZ1Z5UmVBN2J6UHNBaUJCMTBtbG9scG1XMjNaaHk0Q2lXN3k3ei1Ud1puWQ&q=https%3A%2F%2Fgenome.ucsc.edu%2Fcovid19.html&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://genome.ucsc.edu/covid19.html</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
'The UCSC SARS-CoV-2 Genome Browser' publication:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbXBhM202bnk4dWYxVlAtaEE4eFFwcFNpQml3QXxBQ3Jtc0ttWmxhTUg2LU85YkduVnBRNlA4RGZzc2NQbVZTc3ZDbVJMTHN4UGxZQl9MRXN2YURqVkpUVXktb2VhZDZKLXNTWTZ5Z2Zkb0VLODdRVFJ3bHNZQXZGUkFLTlU4SzJfWDhjQzRnRU0tOER5QWx3d0ppUQ&q=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41588-020-0700-8&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://www.nature.com/articles/s4158...</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
'Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic' publication:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqblRycnFVdmt6S2dBc0pnaXN2QVJxZ3BYU2cwZ3xBQ3Jtc0ttbFBUSmNzbldLSks5Sl9RdTFfSUllY0ZnT2hlR3ZrU0pwWldLeUNOcjRlc2Mzd25vYXc4bENQbkx1X2NySDNvTHcyNGNBY2VRaTJidklaT1U4amhqZHE3dl9iUllMRnY3bHJTVXdFZjlHdDUxVmczbw&q=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41588-021-00862-7&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://www.nature.com/articles/s4158...</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
UShER documentation, installation, source code::
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbmtPWWpwNXA1UWhjN0J0UWZkRDFQazYzQ1lKUXxBQ3Jtc0tuYWdyWVlXcEdORmRpREQzRzg0dEJBRmF3ZVFhcWF2d2xLUWRLcnFEV0NtdFh5S1B5amZadEJ4d0tJTTdiS3h5UkpfV1pKOUp2MDJYZU43UGhIUV9sd1QyZnJxZXZkSDVENll4VGpDWGlSQnVWVzQzbw&q=https%3A%2F%2Fgithub.com%2Fyatisht%2Fusher&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://github.com/yatisht/usher</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbDdWUUhzbE40OENfZzh5bjFtWTgwLTZWWWFtZ3xBQ3Jtc0ttM0NHUXpvYkExQ3N6anlJUFZfeHUzcVpFZUtxbklpVGczUkFPdlZ1SkNwSW9JRi1MT1JHUllFQVdJRXZ3bEJfaDlkVXduSjl3cFVBTEVzb2pHYkZMQnI4TWFLUDMxTzJYMk5BbVp4QUR3dFU1UUZRVQ&q=https%3A%2F%2Fusher-wiki.readthedocs.io%2Fen%2Flatest%2F&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://usher-wiki.readthedocs.io/en/...</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
COVID-19 Genomic Epidemiology Toolkit module "Realtime Phylogenetics with UShER:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbEMxbFVmYlR6NkhwVGVLZVU0eFBaWXlyRFQ5Z3xBQ3Jtc0ttbG1CVW9jTU1rTktYY25ydjVmdDRVNHVyeXlHZE9YakRxMjM5eUw4RUttc3dDS3doV0ZJWjZtdHZOb3ptNGl1QnFBQjFpVkh1T3MxY2RVUERxemVuU2J1U25hVXlQVDhrektVSUVLTndSQldzYzE0NA&q=https%3A%2F%2Fwww.cdc.gov%2Famd%2Ftraining%2Fcovid-toolkit%2Fmodule3-3.html&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://www.cdc.gov/amd/training/covi...</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
Learn more about the UCSC Genome Browser:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbFJjR3h5eUw0bkdXMUtfWHlnUU0xbm5sU2l0UXxBQ3Jtc0ttY3RISFBPR0JoR25LcW1uMGQ5U0dxZVFOU0Z6RjhRLTE4RXNFT0NISkxiTmRLS0dZSUdVRnNMZ3VzUnFXdHhZSi1sZE1hZXIzRlY2bDBaQW9KTDRzNFhaR1BtSmc4a0VqU3dLM0hKeDlWUFVudnREOA&q=http%3A%2F%2Fgenome.ucsc.edu&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">http://genome.ucsc.edu</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbW5QcG5UQ013UFpOazJGTTVPM0ttQjJ3TVNad3xBQ3Jtc0trdGRLUGtodllER19relhBbk96aUYxLTBUNmVZX2x0U0J4cWVJZzkyX1RhblBON1Y1cmNETjJVeHdOR2doY3V2SmV0cndPNWdjdWYyRzdEeGl0cEFzZVo1Y1VWY0VBMmFWamJseEk4U3FJX2gxaUoxUQ&q=https%3A%2F%2Ftwitter.com%2Fgenomebrowser&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://twitter.com/genomebrowser</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
Learn more about the UCSC Genomics Institute:
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbVRmUGdFQ0k1bU84bGZ5WUpNaEx5Szd3U1U0QXxBQ3Jtc0ttYXh4bTQwNmhhLUtPUm9OVVZ0TU5PRXZmd09QTDc4bUl5UlVJendMazJzc293YnNFRW9aYWtfbXVPTGFnRFpFa2dCQmN2OGl5S1dMZ1NnbWZlT0lEY2pNeVYzNUtHbjlObGxfWk0zUHFwTEdZZDZ1UQ&q=https%3A%2F%2Ftwitter.com%2Fucscgenomics&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://twitter.com/ucscgenomics</a><span class="style-scope yt-formatted-string" dir="auto" style="border: 0px; caret-color: rgb(3, 3, 3); color: #030303; font-family: Roboto, Arial, sans-serif; font-size: 14px; margin: 0px; padding: 0px; white-space: pre-wrap;">
</span><a class="yt-simple-endpoint style-scope yt-formatted-string" dir="auto" href="https://www.youtube.com/redirect?event=video_description&redir_token=QUFFLUhqbWtLRXU0UVdWZHo0QzNfOWt1WHk4ZDhmV1FMQXxBQ3Jtc0tsRlRlOWdhWGk3MGR6ZkQ1QkxTZ1Azbkw3ZkNwRFFvOElmX0tsbzltODgtNUVxM2tQcWpXOGlVRTAzX2llNHpGcHZQNHFsakpFWTNMd1BteG9JdXJjOFY2a0FlcHEwX0ZZeFYyNWdQMVZfSERfXzFjMA&q=https%3A%2F%2Fgenomics.ucsc.edu%2F&v=1RkqDlEKnyU" rel="nofollow" spellcheck="false" style="-webkit-text-decoration: var(--yt-endpoint-text-regular-decoration,none); color: var(--yt-endpoint-visited-color,var(--yt-spec-call-to-action)); cursor: pointer; display: var(--yt-endpoint-display,inline-block); font-family: Roboto, Arial, sans-serif; font-size: 14px; text-decoration: var(--yt-endpoint-text-regular-decoration,none); white-space: pre-wrap; word-break: var(--yt-endpoint-word-break,none); word-wrap: var(--yt-endpoint-word-wrap,none);" target="_blank">https://genomics.ucsc.edu/</a></p><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-37938415091443258132022-04-23T08:52:00.003-07:002022-04-23T08:52:39.735-07:00Endosymbiosis Animations for "Biodiversity and the Tree of Life"So I am in the midst of co-teachign a very large introductory biology course at UC Davis "BIS2C - Biodiversiy and the tree of Life". I cover much of microbial diversity in this class and also the large scale structure of the Tree of Life. <div><br /></div><div>As always, I spent a lot of time working on slides and such for this class and recently posted some animations based on these slides to Twitter and Facebook and thought I would share some of them here.
For today, I am sharing the animations I made on Endosymbiosis.
I posted a first version of this to Twitter last week.
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Endosymbioses are so cool:<br /><br />Some of the images / animations I will be using today in BIS2C at <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> (I made a little movie and added music here but will have richer explanations for class) <a href="https://t.co/92Eb7PMTjL">pic.twitter.com/92Eb7PMTjL</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1516810921393287171?ref_src=twsrc%5Etfw">April 20, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
Note - I added music - Mussorgsky - Night on Bald Mountain for drama ...
I also posted it to Facebook:</div><div><br /></div><div> <iframe allow="autoplay; clipboard-write; encrypted-media; picture-in-picture; web-share" allowfullscreen="true" frameborder="0" height="535" scrolling="no" src="https://www.facebook.com/plugins/video.php?height=420&href=https%3A%2F%2Fwww.facebook.com%2Fjonathaneisen%2Fvideos%2F285399613787203%2F&show_text=true&width=560&t=0" style="border: none; overflow: hidden;" width="560"></iframe> </div><div><br /></div><div>And boy am I glad I did. Because multiple people commented and pointed out parts that were, well, not correct. I had lecture too soon to fix them so I told my students about this and that I would update the slides. I then spent a day updating everything and made a new version which I think is much much better.</div><div><br />
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">OK - updated with modifications based on corrections/comments from <a href="https://twitter.com/Sergiophyceae?ref_src=twsrc%5Etfw">@Sergiophyceae</a> <a href="https://twitter.com/mcsymbiont?ref_src=twsrc%5Etfw">@mcsymbiont</a> & <a href="https://twitter.com/DanStarrUCDavis?ref_src=twsrc%5Etfw">@DanStarrUCDavis</a> (note, again, these are extracted from slides with lots of other details including comments about which things don't always happen ...) <a href="https://t.co/LNGO8Zs94E">pic.twitter.com/LNGO8Zs94E</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1517015444674121728?ref_src=twsrc%5Etfw">April 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
</div><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-18167652442646923162022-04-05T19:44:00.000-07:002022-04-05T19:44:06.616-07:00A good bye to my beloved Clover <p> </p>
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Our adopted cat Clover is pretty sick right now and likely on her last legs. We (my family, and the family of <a href="https://twitter.com/LoranWyman?ref_src=twsrc%5Etfw">@LoranWyman</a> who were her previous caretakers) are very sad. I compiled some of my Tweets about her here <a href="https://t.co/JqY1Mijips">https://t.co/JqY1Mijips</a></p>— Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1510640619114274816?ref_src=twsrc%5Etfw">April 3, 2022</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Sadly, Clover is gone. I am π. I loved her very very very much. <a href="https://t.co/xQ1QXMQ658">https://t.co/xQ1QXMQ658</a></p>— Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1510763948856930305?ref_src=twsrc%5Etfw">April 3, 2022</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-48632314739907942842022-03-28T19:28:00.002-07:002022-03-28T19:28:24.632-07:00The ongoing saga with the UC Health Insurance Pharmacy "Benefits" Via NavitusWell the saga continues. Here is an update.<div><br /></div><div><br /></div>
It all started March 7. See here for a long thread and also responses.
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Dear <a href="https://twitter.com/UofCalifornia?ref_src=twsrc%5Etfw">@UofCalifornia</a> <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a><br /><br />This is NOT OK. <br /><br />I just got a notice by letter in mail that my insurance will no longer cover the insulin I have been getting "as of January 1, 2022". Letter was dated in February and was received after March 1, 2022. <br /><br />This is NOT OK.</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1500934973775249412?ref_src=twsrc%5Etfw">March 7, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
See this thread in an easier to read format here: <a href="https://threadreaderapp.com/thread/1500934973775249412.html">https://threadreaderapp.com/thread/1500934973775249412.html</a>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Well, in case you missed it. Two weeks ago I posted about the disastrous and dangerous and incompetent new University of California pharmacy benefits "system" which warned me, two months after the fact, that they were cutting off coverage of my insulin 1/n <a href="https://t.co/QuTBaQBsaQ">https://t.co/QuTBaQBsaQ</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506297722776657920?ref_src=twsrc%5Etfw">March 22, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
See this thread in an easier to read format here <a href="https://threadreaderapp.com/thread/1506297722776657920.html">https://threadreaderapp.com/thread/1506297722776657920.html</a>
And then I got told Navitus was going to be instructed to cover my insulins by UCOP but the message clearly was not recieved.
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">Well - good news for me - I have been told that Navitus has been instructed to cover the insulin I have been using. More coming soon when I get confirmation and details.</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506675430069219328?ref_src=twsrc%5Etfw">March 23, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
And finally and thankfully today I was told my insulins would be covered.
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Update - to the saga of the Navitus pharmacy "benefits" plan. I got a call today saying that my Novolog and Lantus insulin would indeed be covered by Navitus. Yay. I am very happy. Now I want to know what is going to happen to others who were harmed by the new plan ... <a href="https://t.co/yvtlODyIbz">https://t.co/yvtlODyIbz</a></p>— Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1508631645460475905?ref_src=twsrc%5Etfw">March 29, 2022</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
I am now interested in what is happening to others out there who have been harmed by the UC / Navitus system.
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
--------
<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-8695531207584943992022-03-23T09:13:00.005-07:002022-03-28T19:47:45.446-07:00Some links to articles about Diabetes and COVID19
Posted some links to Twitter that I am compiling here too about type 1 diabetes and COVID19 with a focus on recommendations for diabetics in current COVID situation
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Posting some information about <a href="https://twitter.com/hashtag/COVID19?src=hash&ref_src=twsrc%5Etfw">#COVID19</a> and <a href="https://twitter.com/hashtag/type1?src=hash&ref_src=twsrc%5Etfw">#type1</a> <a href="https://twitter.com/hashtag/diabetes?src=hash&ref_src=twsrc%5Etfw">#diabetes</a> that might be useful to folks<a href="https://t.co/q9LrTXyrAy">https://t.co/q9LrTXyrAy</a><br /><br />"Your Guide to Post-COVID Travel with Type 1 Diabetes"</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505942542944112640?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">"As masks come off, vulnerable Americans feel left behind"<a href="https://t.co/WGDJ1eII6x">https://t.co/WGDJ1eII6x</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505942712775675904?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">COVID-19 Update: The Diabetes Connection, WHO Concerned about BA.2<a href="https://t.co/GT9xXPMNX2">https://t.co/GT9xXPMNX2</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505943045459496960?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">Coronavirus (COVID-19) β information for people living with type 1 diabetes<a href="https://t.co/4L8MAMGtpz">https://t.co/4L8MAMGtpz</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505943894399225858?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">Why Do Diabetics Need to be Cautious About Omicron Variant?<a href="https://t.co/IdsokhYIpO">https://t.co/IdsokhYIpO</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505944220586049540?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">How COVID-19 Impacts People with Diabetes<a href="https://t.co/iOOeT6N8G9">https://t.co/iOOeT6N8G9</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505965832391733249?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">Rights for Workers with Diabetes During the Coronavirus Pandemic<a href="https://t.co/OjGpLpWEpg">https://t.co/OjGpLpWEpg</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1505965930710413315?ref_src=twsrc%5Etfw">March 21, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">This is also useful: <a href="https://t.co/gx3HDCXLpE">https://t.co/gx3HDCXLpE</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506482704191156226?ref_src=twsrc%5Etfw">March 23, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">In particular this part is important <a href="https://t.co/X7EwIJyPNb">pic.twitter.com/X7EwIJyPNb</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506482705705299972?ref_src=twsrc%5Etfw">March 23, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">This also has some useful information <a href="https://t.co/sFFkf8BtWQ">https://t.co/sFFkf8BtWQ</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506483881721049088?ref_src=twsrc%5Etfw">March 23, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">For example says diabetics are at higher risk even when fully vaccinated "Garza-Silva, who is immunocompromised, and Liber, who is diabetic, are among the millions of Californians at greater risk of complications from a COVID-19 infection despite being fully vaccinated."</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506483883121922049?ref_src=twsrc%5Etfw">March 23, 2022</a></blockquote><p><br /></p><p><br /></p><p>See also</p><p><br /></p><p><a href="https://www.sciencedirect.com/science/article/pii/S1201971222000789">Independent risk factors of COVID-19 pneumonia in vaccinated Mexican adults</a></p><p><a href="https://www.cdc.gov/mmwr/volumes/71/wr/mm7101a4.htm">Risk Factors for Severe COVID-19 Outcomes Among Persons Aged β₯18 Years Who Completed a Primary COVID-19 Vaccination Series β 465 Health Care Facilities, United States, December 2020βOctober 2021</a></p><p><a href="https://www.webmd.com/vaccines/covid-19-vaccine/news/20211122/age-underlying-conditions-top-factors-in-breakthroughs">Age, Underlying Conditions Top Factors in Breakthroughs</a></p><p></p><blockquote><p> A Wall Street Journal analysis found that among fully vaccinated people, the ones most likely to be hospitalized with breakthrough infections of COVID-19 are the elderly and those with specific underlying medical conditions.</p><p>βIn particular, people with diabetes, chronic lung disease, kidney disease and compromised immune systems were at risk of serious outcomes from breakthrough cases,β The Journal reported.</p></blockquote><p></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p><br /></p><p> </p> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-17798220916335398512022-03-23T09:04:00.003-07:002022-03-23T09:04:54.036-07:00Lots of useful responses to question "What should high risk people do in face of relaxed masking requirements"?<p> </p>
So I posted this to Twitter.
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">So - hive mind. A question. If you were at high risk for COVID complications if infected, with the ending of indoor mask requirements, would you just try to avoid large indoor gatherings of people even when you wear a good mask?</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1504847991403819008?ref_src=twsrc%5Etfw">March 18, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<br />
And got lots of useful resposnes.
Rather than compile them here if interested people should browse the responses.
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-8885583077120272492022-03-22T08:43:00.001-07:002022-03-25T11:42:33.116-07:00The ongoing disaster of the new UC Health Insurance Pharmacy "benefits" Recently I posted to Twitter about the disastrous new University of California Pharmacy Benefits system.<div>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Dear <a href="https://twitter.com/UofCalifornia?ref_src=twsrc%5Etfw">@UofCalifornia</a> <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a><br /><br />This is NOT OK. <br /><br />I just got a notice by letter in mail that my insurance will no longer cover the insulin I have been getting "as of January 1, 2022". Letter was dated in February and was received after March 1, 2022. <br /><br />This is NOT OK.</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1500934973775249412?ref_src=twsrc%5Etfw">March 7, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script><div>In summary, I got a letter in March that warned me of something that was about to happen in January (that is, in the past). And what was about to happen was bad - cutting off coverage of my insulin. And the system in place for trying to even find out what was going on and what to do about this was a disaster.</div><div><br /></div>I note, this generated an enormous response and it was clear that this was not just me experiencing the disaster of their system.
<br /></div><div><br /></div><div>I used the threadfreader app to make this into a more easily readable thread here: <a href="https://threadreaderapp.com/thread/1500934973775249412.html">https://threadreaderapp.com/thread/1500934973775249412.html</a></div><div><br /></div><div>A few people pointed me to some contacts at UC Davis to reach out to and I did. They were both great and very helpful. They told me that the UC was working on dealing with many of these issues and some of those responses were rolled out quickly. </div><div><br /></div><div>And I posted about how these efforts were sort of helpful but not ideal. For example</div><div><br />
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Well, the saga continues -- just got this from Navitus. They say I "may be eligible" for an extension of 1 bonus month with my prior prescription. Pretty useless to be honest. <a href="https://t.co/ASUHvYuUwn">pic.twitter.com/ASUHvYuUwn</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1503442099584204800?ref_src=twsrc%5Etfw">March 14, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
</div><div><br /></div><div><br /></div><div><br /></div><div>On March 21, I got a detailed email from the University of California apologizing for the situation and detailing many changes to apparently try and help fix things. I mean, they never should have done this and used this incredibly cheap, low grade system. But at least they are trying to fix things.
<br />
<br />
Below is the email from UC. More about this in a bit but I wanted to share the full text for people to see here.</div><div><div><br /></div><div></div><blockquote><div>An important message from UC about your pharmacy benefits</div><div><br /></div><div>Dear Jonathan,</div><div><br /></div><div>We are writing to acknowledge β and apologize for β the problems many members of the UC community are experiencing with Navitus Health, a new administrator of pharmacy benefits for UC employee and Medicare PPO plans, and to let you know what we are doing to fix the problems.</div><div><br /></div><div>Last year, University of California Health (UCH) and UC Systemwide Human Resources selected Navitus Health to administer pharmacy benefits, starting Jan. 1, 2022. This decision was made following an extensive formal bid process, conducted by a committee with representatives from UCH, Systemwide HR, UC faculty with pharmacy expertise and UCβs retiree association. </div><div><br /></div><div>Navitus was selected as the partner that could provide UC with the best overall flexibility, service, and affordability. However, since UCβs transition to Navitus Health, we have heard from too many members who have been negatively impacted by this change. </div><div><br /></div><div>Some members have had to change prescription drugs, been required to complete time-consuming authorization processes and experienced denials by Navitus, causing unnecessary anxiety and frustration. Navitus failed to meet the scheduled target date for mailing a clinical transition letter, causing hardship and worry for faculty, staff, retirees and their family members. </div><div><br /></div><div>Additionally, like many employers Navitus has faced customer service staffing challenges, leading to wait times that far exceed Navitusβ standards and UC performance guarantees. Among other things, this has put undue pressure on benefits professionals at UC locations and in the UC Retirement Service Center and the UCPath Center, as they have worked to provide support that should be handled by Navitus.</div><div><br /></div><div>We take these problems β and our responsibility to ensure that members of UC health plans have access to the prescriptions they need β very seriously. UCH and UC Systemwide Human Resources have been in constant communication with Navitus, and we want to let you know what we are doing to fix these problems.</div><div><br /></div><div><b>Support with member transitions</b></div><div><ul style="text-align: left;"><li>Due to the delay in mailing clinical transition letters, Navitus has provided an extended transition period to the end of April for drugs that are not covered. Extension letters and an email campaign were recently initiated.</li><li>Navitus will call members who need to transition to new medications directly and offer help with authorizations, denials, and appeals. Those who have experienced a denial for a Not Covered/Non-Formulary medication will also receive a phone call offering help. </li><li>UCH, Alliant (a UC consultant) and Navitus will audit and review the protocols Navitus uses for denials to ensure they are in alignment with Navitus internal guidelines, industry standards and Medicare guidelines β and to identify and correct any gaps. </li></ul></div><div><br /></div><div><b>Customer service improvements</b></div><div><ul style="text-align: left;"><li>Navitus has committed to adding an additional 35 customer service representatives (an increase from 125 to 160) by the end of April, and hopes to add another 15 staff after that, along with additional support for UC benefits professionals.</li><li>Navitus has also added two more personnel with pharmacy clinical expertise to help UC benefit professionals support members.</li><li>In addition, Navitus is exploring a concierge-type customer service model to ensure UC members receive the dedicated assistance they need.</li></ul></div><div><br /></div><div>Again, we sincerely apologize for any difficulties you or your family members have experienced during this transition. We are committed to you receiving the critical health care you deserve, without unnecessary inconvenience or frustration.</div><div><br /></div><div>Sincerely,</div><div> </div><div>Cheryl Lloyd Dr. Carrie Byington</div><div>Vice President Executive Vice President</div><div>Systemwide Human Resources University of California Health</div><div><br /></div><div><br /></div><div>Please do not reply to this message. Replies to this message are routed to an unmonitored mailbox. </div></blockquote><span><a name='more'></a></span>
<p>UPDATE 3/25/22</p><p>So some updates. I posted about the letter here and to Twitter.</p><p> </p><div></div></div><div>
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Well, in case you missed it. Two weeks ago I posted about the disastrous and dangerous and incompetent new University of California pharmacy benefits "system" which warned me, two months after the fact, that they were cutting off coverage of my insulin 1/n <a href="https://t.co/QuTBaQBsaQ">https://t.co/QuTBaQBsaQ</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506297722776657920?ref_src=twsrc%5Etfw">March 22, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
And here is the <a href="https://threadreaderapp.com/thread/1506297722776657920.html">whole thread on Threadreader</a>.
</div><div><br /></div><div>I shared the letter from UC and also some comments. </div><div><br /></div><div>
<br />
One key point - the saga was covered by Caleb Hampton in the Davis Enterprise.
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<blockquote class="twitter-tweet" data-conversation="none"><p lang="en" dir="ltr">Navitus disaster now covered by <a href="https://twitter.com/calebmhampton?ref_src=twsrc%5Etfw">@calebmhampton</a>: UC drug benefits switch leaves employees without coverage for crucial medicines <a href="https://t.co/HoqcBSKEgY">https://t.co/HoqcBSKEgY</a> via <a href="https://twitter.com/alldenews?ref_src=twsrc%5Etfw">@AllDENews</a></p>— Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1506518899415666689?ref_src=twsrc%5Etfw">March 23, 2022</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
<br /><br />
And then I posted that I had received a communication from UCOP that they would tell Navitus to cover my insulin. </div><div><br /></div><div><br /></div>
<br />
Alas, I then got a call and letter from Navitus saying that they were denying my request for an exemption for one of my insulins and approving a request for another.
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-52060773622435098932022-03-19T14:18:00.000-07:002022-03-19T14:18:06.087-07:00Baby Hummingbirds at Yolo Bypass<p> </p>
So I got a glimpse of a hummingbird nest at Yolo Bypass
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Hummingbird sitting in nest at <a href="https://twitter.com/hashtag/yolobypass?src=hash&ref_src=twsrc%5Etfw">#yolobypass</a> - thanks to <a href="https://twitter.com/ucdavis?ref_src=twsrc%5Etfw">@ucdavis</a> Prof. David Rizzo and wife who I bumped into and who pointed it out <a href="https://t.co/qHRxfz2Fgl">pic.twitter.com/qHRxfz2Fgl</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1500566575430045702?ref_src=twsrc%5Etfw">March 6, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">And this was amazing for me - might be 1st hummingbird I have seen in field on a nest since 1988 when I studied Broad tailed hummingbirds at <a href="https://twitter.com/RockyMtnBioLab?ref_src=twsrc%5Etfw">@RockyMtnBioLab</a> with Bill Calder</p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1500569061494702083?ref_src=twsrc%5Etfw">March 6, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
<blockquote class="twitter-tweet" data-conversation="none"><p dir="ltr" lang="en">Here are a few higher resolution pics (now that I got home) <a href="https://t.co/2HXkxJmSKc">pic.twitter.com/2HXkxJmSKc</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1500612133586812931?ref_src=twsrc%5Etfw">March 6, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
And then I went back and got a better look at it , with babies ...
<blockquote class="twitter-tweet"><p dir="ltr" lang="en">Follow up from a few days ago .. <br /><br />Baby<br />Hummingbirds<br />In<br />Nest<br /><br />I did not want to disturb so stayed really far away (this is cropped and was taken with a 500 mm lens)<br /><br />But still -- OMG OMG OMG <a href="https://t.co/DboPEDSfkP">https://t.co/DboPEDSfkP</a> <a href="https://t.co/ceI3HnQa1Z">pic.twitter.com/ceI3HnQa1Z</a></p>β Jonathan Eisen (@phylogenomics) <a href="https://twitter.com/phylogenomics/status/1504680917641564160?ref_src=twsrc%5Etfw">March 18, 2022</a></blockquote> <script async="" charset="utf-8" src="https://platform.twitter.com/widgets.js"></script>
And I posted some videos too
<iframe allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="" frameborder="0" height="315" src="https://www.youtube.com/embed/UaqutXcflYg" title="YouTube video player" width="560"></iframe>
<div><br /></div><div><iframe allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="" frameborder="0" height="315" src="https://www.youtube.com/embed/VmwvTs985Os" title="YouTube video player" width="560"></iframe>
</div><div><br /></div><div><iframe allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="" frameborder="0" height="315" src="https://www.youtube.com/embed/_DPnMSu9GRo" title="YouTube video player" width="560"></iframe>
</div><div><br /></div><div><iframe allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen="" frameborder="0" height="315" src="https://www.youtube.com/embed/e6bYnBAeNOA" title="YouTube video player" width="560"></iframe></div><div><br /></div><div><br /></div><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-59536271257536104112022-02-11T13:29:00.003-08:002022-02-11T13:29:38.595-08:00A field guide to SarsCOV2<p> </p>
Gave a talk on SarsCOV2 to the Yolo County Community of Practice group. I basically discussed how the concept of a field guide can be useful for thinking about SarsCOV2. Here are my slides
<iframe src="//www.slideshare.net/slideshow/embed_code/key/pjeUcROBxNaSLM" width="595" height="485" frameborder="0" marginwidth="0" marginheight="0" scrolling="no" style="border:1px solid #CCC; border-width:1px; margin-bottom:5px; max-width: 100%;" allowfullscreen> </iframe> <div style="margin-bottom:5px"> <strong> <a href="//www.slideshare.net/phylogenomics/a-field-guide-to-sarscov2" title="A Field Guide to Sars-CoV-2" target="_blank">A Field Guide to Sars-CoV-2</a> </strong> from <strong><a href="//www.slideshare.net/phylogenomics" target="_blank">Jonathan Eisen</a></strong> </div>
I will try to post the recording of the talk at some point.
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-56300030611053122522022-02-09T21:38:00.001-08:002022-02-09T21:38:12.688-08:00Northern Harrier at Yolo Bypass <p> Some pics ...</p><p><br /></p><p><br /></p>
<iframe src="https://jonathaneisen.smugmug.com/frame/slideshow?key=fRXnG6&speed=3&transition=fade&autoStart=1&captions=0&navigation=0&playButton=0&randomize=0&transitionSpeed=2" width="600" height="400" frameborder="no" scrolling="no"></iframe>
<div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
<br />
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0tag:blogger.com,1999:blog-10781944.post-25431589418112320912022-01-10T16:23:00.001-08:002022-01-10T16:23:09.720-08:00Best Pics from Nimbus Fish HatcheryWent to Sacramento for a Doctor's appointment and then had a 2 hour Zoom call. Decided to do the call while walking around the Nimbus Fish Hatchery which I have never been to. I heard that people had seen a rare duck there so went on over. And it was awesome. I then messaged a grad student in my lab, Alonna Wright who lives nearby and she came over for a walk after lunch. Here is a link to a slideshow of some of the pics I got
<iframe src="https://jonathaneisen.smugmug.com/frame/slideshow?key=fzJLWz&speed=3&transition=fade&autoStart=1&captions=0&navigation=0&playButton=0&randomize=0&transitionSpeed=2" width="600" height="400" frameborder="no" scrolling="no"></iframe><div class="blogger-post-footer"><br />
--------<br />
This is from the <a href =http://phylogenomics.blogspot.com > "Tree of Life Blog"</a>
of Jonathan Eisen, an evolutionary biologist and Open Access advocate
at the University of California, Davis. For short updates, follow <A HREF = "http://twitter.com/phylogenomics" > me on Twitter. </a>
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<br /></div>Jonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.com0