tag:blogger.com,1999:blog-10781944.post200216772751182701..comments2024-03-28T00:36:36.460-07:00Comments on The Tree of Life: Cool Plant Comparative Genomics Resource: PhytozomeJonathan Eisenhttp://www.blogger.com/profile/07953790938128734305noreply@blogger.comBlogger3125tag:blogger.com,1999:blog-10781944.post-89203914191623590362008-09-04T09:40:00.000-07:002008-09-04T09:40:00.000-07:00Wow, clustering of extant genes to get ancient gen...Wow, clustering of extant genes to get ancient genome data, and all in one site! I'm sure this will be a great resource for my work. I also love the data retrieval service BioMart at Phytozome.Argent23https://www.blogger.com/profile/09403043585047351035noreply@blogger.comtag:blogger.com,1999:blog-10781944.post-45358379923135874662008-09-03T09:48:00.000-07:002008-09-03T09:48:00.000-07:00dont know any more --- just posted the information...dont know any more --- just posted the information about it --- I am not involved in making itJonathan Eisenhttps://www.blogger.com/profile/07953790938128734305noreply@blogger.comtag:blogger.com,1999:blog-10781944.post-20012474342627725852008-09-03T09:09:00.000-07:002008-09-03T09:09:00.000-07:00That's a really nice resource! Great interface, to...That's a really nice resource! Great interface, too. Looking fwd to reading the paper describing the clustering algorithm. Is it distance-based? <BR/><BR/>A similar tool is <A HREF="http://nypg.bio.nyu.edu/orthologid" REL="nofollow">OrthologID</A> that uses a character-based phylogenetic framework to establish orthology. <BR/><BR/>Chiu et al. (2006) OrthologID: automation of genome-scale ortholog identification within a parsimony framework. <I>Bioinformatics</I> 22(6):699-707. [<A HREF="http://dx.doi.org/10.1093/bioinformatics/btk040" REL="nofollow">free full text</A>]sergios-orestis kolokotronishttps://www.blogger.com/profile/05492639186814501804noreply@blogger.com